The 2.0 version of rSNPBase

Variant report

Variant rs11968288
Chromosome Location chr6:24802199-24802200
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:24776400-24803200 Weak transcription HSMMtube muscle
2 chr6:24776400-24807400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr6:24776800-24807600 Weak transcription Placenta Amnion Placenta Amnion
4 chr6:24777000-24802400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr6:24777000-24805000 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr6:24777000-24806200 Weak transcription Spleen Spleen
7 chr6:24777000-24808000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr6:24777000-24809400 Weak transcription Brain Germinal Matrix brain
9 chr6:24777000-24811600 Weak transcription Brain Hippocampus Middle brain
10 chr6:24777000-24847600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr6:24777000-24859600 Weak transcription Psoas Muscle Psoas
12 chr6:24777200-24802400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr6:24777200-24802400 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr6:24777600-24802400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr6:24781000-24802400 Weak transcription Muscle Satellite Cultured Cells --
16 chr6:24782400-24803000 Weak transcription Pancreas Pancrea
17 chr6:24783600-24802400 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr6:24787600-24806200 Weak transcription Fetal Stomach stomach
19 chr6:24787800-24802600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr6:24787800-24802600 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr6:24788000-24805600 Weak transcription Fetal Muscle Leg muscle
22 chr6:24788000-24810200 Weak transcription Left Ventricle heart
23 chr6:24788000-24832000 Weak transcription Brain Substantia Nigra brain
24 chr6:24788200-24802400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr6:24788800-24848200 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr6:24789000-24802400 Weak transcription HSMM muscle
27 chr6:24789000-24807000 Weak transcription GM12878-XiMat blood
28 chr6:24789200-24805800 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr6:24789200-24807400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr6:24789200-24842600 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr6:24789400-24802400 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr6:24789400-24807400 Weak transcription Fetal Muscle Trunk muscle
33 chr6:24789400-24807800 Weak transcription Dnd41 blood
34 chr6:24789800-24802600 Weak transcription Thymus Thymus
35 chr6:24797800-24802600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr6:24798200-24802600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr6:24798200-24802600 Weak transcription Brain Anterior Caudate brain
38 chr6:24798200-24802600 Weak transcription Ovary ovary
39 chr6:24798200-24827400 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr6:24798200-24841200 Weak transcription H1 Cell Line embryonic stem cell
41 chr6:24798400-24802600 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr6:24798800-24802400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr6:24799000-24802400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
44 chr6:24799400-24805000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr6:24799400-24805000 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr6:24799800-24802600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr6:24800000-24802600 Weak transcription Hela-S3 cervix
48 chr6:24800000-24802600 Weak transcription Osteobl bone
49 chr6:24800000-24807400 Weak transcription H9 Cell Line embryonic stem cell
50 chr6:24800000-24843200 Weak transcription Liver Liver

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Last update: Aug 31, 2015