Variant report

Variant	rs73399194
Chromosome Location	chr15:40200679-40200680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40198786..40200862-chr15:40206806..40208516,2	K562	blood:
2	chr15:40198142..40201041-chr15:40203381..40204995,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10162972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28367262	1.00[EUR][1000 genomes]
rs56324718	0.90[EUR][1000 genomes]
rs57713628	0.91[EUR][1000 genomes]
rs72729451	1.00[ASN][1000 genomes]
rs72729453	1.00[ASN][1000 genomes]
rs72729458	1.00[ASN][1000 genomes]
rs73399187	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399195	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399200	1.00[AFR][1000 genomes]
rs73401105	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40190200-40201200	Weak transcription	Aorta	Aorta
2	chr15:40194600-40211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:40197200-40210200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:40197400-40209200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:40197800-40201200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:40198000-40200800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:40198200-40201400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:40198600-40201600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:40198800-40201600	Enhancers	NHDF-Ad	bronchial
10	chr15:40199000-40201600	Enhancers	HUVEC	blood vessel
11	chr15:40199200-40201600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:40199400-40201400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:40199400-40202000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:40199600-40200800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:40199600-40200800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:40199600-40201200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:40199600-40201400	Enhancers	HSMM	muscle
18	chr15:40199600-40201600	Enhancers	HMEC	breast
19	chr15:40199600-40201800	Enhancers	NHEK	skin
20	chr15:40199600-40202400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:40199800-40201200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:40199800-40201200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:40199800-40201400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:40199800-40201600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr15:40199800-40201800	Enhancers	HSMMtube	muscle
26	chr15:40199800-40202000	Enhancers	Osteobl	bone
27	chr15:40199800-40211800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:40200000-40201600	Enhancers	NH-A	brain
29	chr15:40200200-40200800	Enhancers	NHLF	lung
30	chr15:40200200-40201000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr15:40200200-40201200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:40200200-40202600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:40200400-40201000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr15:40200400-40201600	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr15:40200400-40203000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:40200600-40201200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:40200600-40207400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:40200600-40210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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