Variant report

Variant	rs28367262
Chromosome Location	chr15:40175179-40175180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40170456..40172952-chr15:40173519..40175425,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10162972	1.00[EUR][1000 genomes]
rs10438261	1.00[AMR][1000 genomes]
rs166701	1.00[AMR][1000 genomes]
rs56324718	0.90[EUR][1000 genomes]
rs57713628	0.91[EUR][1000 genomes]
rs7172840	1.00[AMR][1000 genomes]
rs73399187	1.00[EUR][1000 genomes]
rs73399194	1.00[EUR][1000 genomes]
rs73399195	1.00[EUR][1000 genomes]
rs73401105	1.00[EUR][1000 genomes]
rs8031508	1.00[AMR][1000 genomes]
rs8041100	1.00[AMR][1000 genomes]
rs902701	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40162400-40187000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40164600-40176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40165000-40176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:40165200-40176200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:40167800-40176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:40169000-40175200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:40169400-40175200	Enhancers	NHDF-Ad	bronchial
8	chr15:40169600-40178600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:40170600-40175200	Enhancers	Osteobl	bone
10	chr15:40171000-40176800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:40171200-40176000	Weak transcription	HMEC	breast
12	chr15:40171200-40176200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:40171600-40178600	Weak transcription	NH-A	brain
14	chr15:40172600-40176200	Weak transcription	Hela-S3	cervix
15	chr15:40173000-40175400	Enhancers	K562	blood
16	chr15:40173200-40175400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:40173200-40175600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:40173600-40178000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:40174200-40175200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:40174200-40175600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:40174200-40176800	Weak transcription	HSMMtube	muscle
22	chr15:40174400-40176600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:40174600-40175400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
24	chr15:40174600-40175400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:40174600-40176200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:40174600-40176200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:40174600-40176400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:40174800-40175200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr15:40174800-40175400	Strong transcription	HSMM	muscle
30	chr15:40174800-40176800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:40174800-40177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:40174800-40178800	Weak transcription	NHLF	lung
33	chr15:40175000-40175200	Enhancers	Pancreas	Pancrea
34	chr15:40175000-40175400	Enhancers	H9 Cell Line	embryonic stem cell
35	chr15:40175000-40176600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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