Variant report

Variant	rs8041100
Chromosome Location	chr15:40188293-40188294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40183021..40186569-chr15:40187372..40191389,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10438261	1.00[AMR][1000 genomes]
rs166701	1.00[AMR][1000 genomes]
rs28367262	1.00[AMR][1000 genomes]
rs7172840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031508	1.00[AMR][1000 genomes]
rs902701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40180200-40197000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:40180600-40189200	Weak transcription	HSMMtube	muscle
3	chr15:40180800-40188400	Weak transcription	NHDF-Ad	bronchial
4	chr15:40180800-40197200	Weak transcription	Pancreas	Pancrea
5	chr15:40181000-40188400	Weak transcription	NHLF	lung
6	chr15:40181000-40188800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:40181200-40188400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:40181400-40189000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:40181600-40188400	Weak transcription	HUVEC	blood vessel
10	chr15:40181600-40196600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:40181600-40196800	Weak transcription	NHEK	skin
12	chr15:40183400-40189200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:40183800-40188800	Weak transcription	Aorta	Aorta
14	chr15:40184000-40190800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:40184000-40199600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:40185000-40188800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:40185200-40188400	Weak transcription	K562	blood
18	chr15:40185200-40188400	Weak transcription	Osteobl	bone
19	chr15:40185200-40188800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:40185200-40189200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:40185200-40189400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:40185200-40189400	Weak transcription	HSMM	muscle
23	chr15:40185800-40190000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:40187400-40190000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:40187400-40191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:40187600-40190200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:40187800-40191000	Enhancers	NH-A	brain
28	chr15:40188000-40190000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:40188000-40194200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:40188200-40189400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:40188200-40189400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:40188200-40190000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links