Variant report

Variant	rs902701
Chromosome Location	chr15:40165741-40165742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40159004..40160839-chr15:40165327..40167555,2	K562	blood:
2	chr15:40077399..40079202-chr15:40164859..40166897,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10438261	1.00[AMR][1000 genomes]
rs166701	1.00[AMR][1000 genomes]
rs28367262	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172840	1.00[AMR][1000 genomes]
rs8031508	1.00[AMR][1000 genomes]
rs8041100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40147400-40167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:40150000-40171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40153000-40170000	Weak transcription	NH-A	brain
4	chr15:40153200-40169800	Weak transcription	NHEK	skin
5	chr15:40153400-40166200	Weak transcription	NHLF	lung
6	chr15:40153400-40166400	Weak transcription	NHDF-Ad	bronchial
7	chr15:40160800-40169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:40161200-40166200	Weak transcription	HSMM	muscle
9	chr15:40162400-40169200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:40162400-40187000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:40162600-40166200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:40162600-40169600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:40162600-40170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:40163200-40169600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:40163200-40174200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:40163600-40166800	Weak transcription	Osteobl	bone
17	chr15:40163800-40169600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:40164200-40166200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:40164200-40169200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:40164600-40169400	Weak transcription	K562	blood
21	chr15:40164600-40176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr15:40164800-40166200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:40164800-40175000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr15:40165000-40169200	Weak transcription	HSMMtube	muscle
25	chr15:40165000-40176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:40165200-40167000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:40165200-40176200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:40165400-40166200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:40165400-40166800	Enhancers	GM12878-XiMat	blood
30	chr15:40165600-40165800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr15:40165600-40166800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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