Variant report

Variant	rs10438261
Chromosome Location	chr15:40227015-40227016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40226656..40228180-chr15:40261724..40263385,2	K562	blood:
2	chr15:40226223..40227908-chr15:40241958..40244363,2	MCF-7	breast:
3	chr15:40226451..40228182-chr15:40236413..40239026,2	MCF-7	breast:
4	chr15:40214834..40219458-chr15:40222098..40228403,10	K562	blood:
5	chr15:40211366..40214080-chr15:40223428..40228644,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246863	Chromatin interaction
ENSG00000200305	Chromatin interaction
ENSG00000166073	Chromatin interaction
ENSG00000238564	Chromatin interaction
ENSG00000259389	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs166701	1.00[AMR][1000 genomes]
rs28367262	1.00[AMR][1000 genomes]
rs7172840	1.00[AMR][1000 genomes]
rs8031508	1.00[AMR][1000 genomes]
rs8041100	1.00[AMR][1000 genomes]
rs902701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40224800-40227800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:40225200-40227800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:40225400-40227400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:40225400-40228000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:40225400-40228200	Active TSS	A549	lung
6	chr15:40225600-40227200	Active TSS	Placenta	Placenta
7	chr15:40225600-40227400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:40225600-40227400	Active TSS	Ovary	ovary
9	chr15:40225600-40227800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:40225600-40227800	Active TSS	HSMM	muscle
11	chr15:40225800-40227200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr15:40225800-40227200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr15:40225800-40227200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:40225800-40227200	Active TSS	Aorta	Aorta
15	chr15:40225800-40227200	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr15:40225800-40227200	Active TSS	Esophagus	oesophagus
17	chr15:40225800-40227200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:40225800-40227200	Active TSS	Left Ventricle	heart
19	chr15:40225800-40227200	Active TSS	Lung	lung
20	chr15:40225800-40227200	Active TSS	Pancreas	Pancrea
21	chr15:40225800-40227200	Active TSS	Placenta Amnion	Placenta Amnion
22	chr15:40225800-40227200	Active TSS	Psoas Muscle	Psoas
23	chr15:40225800-40227200	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr15:40225800-40227400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:40225800-40227400	Active TSS	Fetal Brain Female	brain
26	chr15:40225800-40227400	Active TSS	Right Atrium	heart
27	chr15:40225800-40227400	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr15:40225800-40227400	Active TSS	GM12878-XiMat	blood
29	chr15:40225800-40227600	Active TSS	H1 Cell Line	embryonic stem cell
30	chr15:40225800-40227600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr15:40225800-40227600	Active TSS	NHLF	lung
32	chr15:40225800-40227800	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr15:40226000-40227200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:40226000-40227200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:40226000-40227200	Active TSS	Fetal Muscle Trunk	muscle
36	chr15:40226000-40227200	Active TSS	Gastric	stomach
37	chr15:40226000-40227400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr15:40226000-40227400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:40226000-40227400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:40226000-40227400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:40226000-40227600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:40226000-40227800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:40226000-40228000	Active TSS	H9 Cell Line	embryonic stem cell
44	chr15:40226200-40227200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:40226200-40227400	Active TSS	Brain Germinal Matrix	brain
46	chr15:40226400-40227200	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr15:40226400-40227200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr15:40226400-40227200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr15:40226400-40227200	Flanking Active TSS	Colonic Mucosa	Colon
50	chr15:40226600-40227200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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