Variant report

Variant	rs73400258
Chromosome Location	chr15:49784271-49784272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60172656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60707261	0.89[AFR][1000 genomes]
rs61014555	0.89[AFR][1000 genomes]
rs73400247	1.00[AMR][1000 genomes]
rs73400271	0.92[AFR][1000 genomes]
rs73400275	0.92[AFR][1000 genomes]
rs73404129	0.89[AFR][1000 genomes]
rs73404137	0.89[AFR][1000 genomes]
rs73404155	0.86[AFR][1000 genomes]
rs73404164	0.88[AFR][1000 genomes]
rs73404198	0.89[AFR][1000 genomes]
rs73406010	0.89[AFR][1000 genomes]
rs73406011	0.89[AFR][1000 genomes]
rs73406015	0.89[AFR][1000 genomes]
rs73406020	0.89[AFR][1000 genomes]
rs73406029	0.89[AFR][1000 genomes]
rs73406033	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043119	chr15:49760222-49844366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49777200-49788800	Weak transcription	Fetal Lung	lung
3	chr15:49778400-49787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49781800-49784600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:49781800-49789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:49782200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:49782400-49785600	Enhancers	Osteobl	bone
8	chr15:49783600-49789800	Enhancers	Hela-S3	cervix
9	chr15:49783800-49784800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:49784000-49784400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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