Variant report
Variant | rs73404155 |
---|---|
Chromosome Location | chr15:49857728-49857729 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000104047 | Chromatin interaction |
ENSG00000166262 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs56763435 | 0.83[AMR][1000 genomes] |
rs58370889 | 0.83[AMR][1000 genomes] |
rs58619514 | 0.83[AMR][1000 genomes] |
rs59152286 | 0.83[AMR][1000 genomes] |
rs60130190 | 0.89[AFR][1000 genomes] |
rs60172656 | 0.86[AFR][1000 genomes] |
rs60707261 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61014555 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61344016 | 0.83[AMR][1000 genomes] |
rs73391027 | 0.83[AFR][1000 genomes] |
rs73391029 | 0.83[AFR][1000 genomes] |
rs73400258 | 0.86[AFR][1000 genomes] |
rs73400271 | 0.94[AFR][1000 genomes] |
rs73400275 | 0.94[AFR][1000 genomes] |
rs73404129 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73404137 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73404164 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73404174 | 0.83[AMR][1000 genomes] |
rs73404185 | 0.83[AMR][1000 genomes] |
rs73404187 | 0.83[AMR][1000 genomes] |
rs73404198 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73406008 | 0.83[AMR][1000 genomes] |
rs73406010 | 0.97[AFR][1000 genomes] |
rs73406011 | 0.97[AFR][1000 genomes] |
rs73406014 | 0.83[AMR][1000 genomes] |
rs73406015 | 0.97[AFR][1000 genomes] |
rs73406020 | 0.97[AFR][1000 genomes] |
rs73406029 | 0.97[AFR][1000 genomes] |
rs73406033 | 0.89[AFR][1000 genomes] |
rs73406042 | 0.89[AFR][1000 genomes] |
rs73406043 | 0.89[AFR][1000 genomes] |
rs73406074 | 0.83[AFR][1000 genomes] |
rs73406095 | 0.83[AFR][1000 genomes] |
rs73406097 | 0.83[AFR][1000 genomes] |
rs74012433 | 0.83[AMR][1000 genomes] |
rs8026895 | 0.83[AMR][1000 genomes] |
rs8030707 | 0.83[AMR][1000 genomes] |
rs9972316 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv569392 | chr15:49789413-49926300 | ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
2 | esv3379973 | chr15:49823709-49868102 | Weak transcription ZNF genes & repeats Enhancers Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv431388 | chr15:49835663-49997483 | Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
4 | nsv1040578 | chr15:49841444-49890789 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:49856200-49897400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |