Variant report

Variant	rs73406097
Chromosome Location	chr15:49943468-49943469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs60130190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60707261	0.86[AFR][1000 genomes]
rs61014555	0.86[AFR][1000 genomes]
rs73391027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400271	0.83[AFR][1000 genomes]
rs73400275	0.83[AFR][1000 genomes]
rs73404129	0.86[AFR][1000 genomes]
rs73404137	0.86[AFR][1000 genomes]
rs73404155	0.83[AFR][1000 genomes]
rs73404164	0.85[AFR][1000 genomes]
rs73404198	0.86[AFR][1000 genomes]
rs73406010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406020	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406033	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49938400-49944600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:49938400-49944600	Weak transcription	Ovary	ovary
3	chr15:49938400-49945400	Weak transcription	Fetal Heart	heart
4	chr15:49938800-49946200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:49939000-49944400	Weak transcription	HSMMtube	muscle
6	chr15:49939000-49944600	Weak transcription	Osteobl	bone
7	chr15:49939000-49945000	Weak transcription	Left Ventricle	heart
8	chr15:49940000-49944400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:49943400-49943600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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