Variant report

Variant	rs73402137
Chromosome Location	chr8:130639072-130639073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10093490	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098018	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28675160	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61545604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6980681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842916	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130636800-130651600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130638200-130647600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130638600-130639800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:130638600-130642800	Enhancers	NHEK	skin
5	chr8:130638800-130639200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:130638800-130639400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:130638800-130640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:130638800-130642800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:130639000-130639800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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