Variant report

Variant	rs7842916
Chromosome Location	chr8:130631684-130631685
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10093490	0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098018	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10505539	1.00[EUR][1000 genomes]
rs16904097	1.00[EUR][1000 genomes]
rs28675160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58073683	1.00[EUR][1000 genomes]
rs60065770	1.00[EUR][1000 genomes]
rs61545604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6980681	0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397745	1.00[EUR][1000 genomes]
rs73397749	1.00[EUR][1000 genomes]
rs73397760	1.00[EUR][1000 genomes]
rs73397786	1.00[EUR][1000 genomes]
rs73401626	1.00[EUR][1000 genomes]
rs73401655	1.00[EUR][1000 genomes]
rs73402137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711567	1.00[EUR][1000 genomes]
rs73711568	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv525691	chr8:130627555-130631930	Enhancers Genic enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130629800-130632000	Enhancers	Dnd41	blood
2	chr8:130630000-130632400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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