Variant report
| Variant | rs73403823 |
|---|---|
| Chromosome Location | chr15:54846394-54846395 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16974746 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16974749 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16974760 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28409858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28432763 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28583403 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56313318 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57263358 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57885004 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58494114 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58836650 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58859617 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59003953 | 1.00[EUR][1000 genomes] |
| rs7172780 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7179699 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73403821 | 0.92[AFR][1000 genomes] |
| rs73421552 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73421555 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73421560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74014209 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8033128 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038660 | chr15:54756184-55039913 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv904236 | chr15:54820897-54912439 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3344298 | chr15:54843610-54846683 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3326604 | chr15:54844185-54847033 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54811000-54869600 | Weak transcription | Aorta | Aorta |
| 2 | chr15:54839800-54858800 | Weak transcription | Fetal Lung | lung |
