Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12101359	0.81[YRI][hapmap]
rs12101382	0.82[YRI][hapmap]
rs16974746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16974749	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16974760	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2681963	0.81[YRI][hapmap]
rs28409858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28432763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28583403	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56313318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57263358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57885004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58494114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58836650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58859617	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59003953	1.00[EUR][1000 genomes]
rs7172780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403821	0.89[AFR][1000 genomes]
rs73403823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74014209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042622	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung
3	chr15:54851600-54852400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54851600-54852600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:54852000-54855600	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search: