Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35888094..35890859-chr6:36167243..36169952,2	K562	blood:
2	chr6:35889868..35892121-chr6:35927053..35928934,3	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2766530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2817029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56881012	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57599985	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60194097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404059	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35889200-35893800	Weak transcription	Lung	lung
2	chr6:35889200-35898600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:35889400-35893400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:35889400-35893600	Weak transcription	Esophagus	oesophagus
5	chr6:35889400-35893800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:35889400-35895600	Weak transcription	Placenta	Placenta
7	chr6:35889400-35898600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:35889600-35890800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:35889800-35890800	Flanking Active TSS	HepG2	liver
10	chr6:35889800-35891000	Enhancers	Fetal Intestine Small	intestine
11	chr6:35889800-35893600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:35889800-35893800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:35889800-35901600	Weak transcription	Psoas Muscle	Psoas
14	chr6:35890000-35890800	Flanking Active TSS	K562	blood
15	chr6:35890200-35891000	Enhancers	Fetal Intestine Large	intestine
16	chr6:35890400-35890800	Enhancers	Dnd41	blood
17	chr6:35890400-35890800	Enhancers	GM12878-XiMat	blood
18	chr6:35890400-35893600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:35890400-35893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
21	chr6:35890600-35893800	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search: