Variant report

Variant	rs60194097
Chromosome Location	chr6:35832038-35832039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35825613..35827304-chr6:35830007..35832930,2	K562	blood:
2	chr6:35830371..35833197-chr6:35885188..35887117,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2766530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2817029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2817030	0.87[AFR][1000 genomes]
rs2859418	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56881012	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57599985	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61208751	0.92[AFR][1000 genomes]
rs73404053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404056	0.90[AFR][1000 genomes]
rs73404059	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404067	0.92[AFR][1000 genomes]
rs73404086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969028	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
3	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:35801000-35832600	Strong transcription	Fetal Thymus	thymus
5	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:35801200-35849000	Strong transcription	Dnd41	blood
8	chr6:35801400-35832400	Strong transcription	HepG2	liver
9	chr6:35804400-35849000	Strong transcription	K562	blood
10	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
12	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
13	chr6:35813400-35833000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:35815800-35840600	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr6:35816200-35832400	Strong transcription	Hela-S3	cervix
16	chr6:35816800-35836400	Weak transcription	Psoas Muscle	Psoas
17	chr6:35816800-35844000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:35817400-35839200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:35817400-35848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:35819000-35839800	Weak transcription	Fetal Heart	heart
22	chr6:35820200-35832800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:35821600-35834400	Weak transcription	HSMMtube	muscle
24	chr6:35821800-35841200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:35822200-35837800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:35824400-35837000	Weak transcription	Small Intestine	intestine
27	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
29	chr6:35824600-35836800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:35824800-35837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:35824800-35847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:35825000-35833600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:35825000-35836800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:35825200-35834000	Weak transcription	Ovary	ovary
36	chr6:35825200-35834400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:35825200-35836400	Weak transcription	Fetal Brain Male	brain
38	chr6:35825200-35836800	Weak transcription	NHDF-Ad	bronchial
39	chr6:35825200-35837000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:35825200-35848600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:35826200-35840600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:35826800-35844400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:35827000-35832600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:35827000-35835800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:35828000-35832800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:35828000-35835200	Strong transcription	A549	lung

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