Variant report

Variant	rs73404067
Chromosome Location	chr6:35845699-35845700
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35838793..35840397-chr6:35843278..35846041,2	K562	blood:
2	chr6:35844707..35847312-chr6:35855207..35856955,2	MCF-7	breast:
3	chr6:35842250..35843797-chr6:35844569..35847001,2	K562	blood:
4	chr6:35842246..35843757-chr6:35844180..35846416,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2766530	0.86[AFR][1000 genomes]
rs2817029	0.86[AFR][1000 genomes]
rs2817030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859418	0.83[AFR][1000 genomes]
rs2859419	1.00[EUR][1000 genomes]
rs58738572	1.00[EUR][1000 genomes]
rs60194097	0.92[AFR][1000 genomes]
rs61208751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929955	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404053	0.88[AFR][1000 genomes]
rs73404056	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73404059	0.90[AFR][1000 genomes]
rs73729613	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:35801200-35849000	Strong transcription	Dnd41	blood
4	chr6:35804400-35849000	Strong transcription	K562	blood
5	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
7	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:35817400-35848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
11	chr6:35824800-35847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:35825200-35848600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:35832800-35847400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:35833600-35848600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:35834000-35848600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:35834400-35848200	Strong transcription	HepG2	liver
23	chr6:35834400-35848800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:35835000-35865400	Weak transcription	Spleen	Spleen
25	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:35836000-35847600	Weak transcription	Lung	lung
27	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:35837400-35863200	Weak transcription	Pancreas	Pancrea
29	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
30	chr6:35837400-35887400	Weak transcription	Gastric	stomach
31	chr6:35837600-35846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:35837600-35846800	Weak transcription	Fetal Brain Female	brain
33	chr6:35837600-35846800	Weak transcription	Left Ventricle	heart
34	chr6:35837600-35846800	Weak transcription	Ovary	ovary
35	chr6:35837600-35847200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:35837600-35847200	Weak transcription	Fetal Brain Male	brain
37	chr6:35837600-35847400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:35837600-35848600	Weak transcription	NHDF-Ad	bronchial
39	chr6:35837600-35849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:35837600-35854200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:35837600-35855400	Weak transcription	Brain Substantia Nigra	brain
42	chr6:35837800-35846000	Weak transcription	A549	lung
43	chr6:35837800-35846200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:35837800-35846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:35837800-35846400	Weak transcription	Fetal Muscle Leg	muscle
46	chr6:35837800-35847000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:35837800-35847000	Weak transcription	Fetal Kidney	kidney
48	chr6:35837800-35847000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:35837800-35847400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:35837800-35848000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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