Variant report

Variant	rs2859419
Chromosome Location	chr6:35800029-35800030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35799857..35801996-chr6:35804965..35806717,2	K562	blood:
2	chr6:35798317..35801989-chr6:35804923..35807992,3	MCF-7	breast:
3	chr6:35743698..35745917-chr6:35798640..35800588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction
ENSG00000196748	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2817030	1.00[EUR][1000 genomes]
rs58738572	1.00[EUR][1000 genomes]
rs61208751	1.00[EUR][1000 genomes]
rs6929955	1.00[EUR][1000 genomes]
rs73404056	1.00[EUR][1000 genomes]
rs73404067	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv1791730	chr6:35754783-35805144	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35777000-35801400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35791400-35824200	Weak transcription	Fetal Brain Male	brain
4	chr6:35791600-35819800	Weak transcription	NHLF	lung
5	chr6:35793000-35801400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:35793200-35801400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:35793400-35805000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:35797000-35800200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:35797200-35800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:35797200-35800600	Weak transcription	Fetal Brain Female	brain
11	chr6:35797200-35801400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:35797200-35801400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:35797400-35801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:35797400-35801400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:35797600-35801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:35797600-35801400	Weak transcription	Primary T cells from cord blood	blood
17	chr6:35797800-35800600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:35797800-35801400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:35797800-35801400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:35798000-35800400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:35798000-35801000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:35798000-35801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:35798000-35803000	Weak transcription	Brain Angular Gyrus	brain
24	chr6:35798200-35800600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:35798200-35801400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:35798200-35801400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:35798200-35801400	Weak transcription	K562	blood
28	chr6:35798200-35823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:35798400-35800600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:35798400-35800800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:35798400-35801200	Weak transcription	A549	lung
32	chr6:35798600-35800400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:35798600-35801400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:35798800-35800400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:35798800-35800400	Weak transcription	GM12878-XiMat	blood
36	chr6:35798800-35800400	Weak transcription	Hela-S3	cervix
37	chr6:35798800-35800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:35798800-35801200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:35798800-35801200	Weak transcription	HSMM	muscle
40	chr6:35798800-35801400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:35798800-35801400	Weak transcription	Left Ventricle	heart
42	chr6:35799000-35800600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:35799000-35800600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:35799000-35800600	Weak transcription	Brain Germinal Matrix	brain
45	chr6:35799000-35800600	Weak transcription	HUVEC	blood vessel
46	chr6:35799000-35801000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:35799000-35801000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:35799000-35801200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:35799000-35802600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:35799200-35800800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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