Variant report

Variant	rs58738572
Chromosome Location	chr6:35898348-35898349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2817030	1.00[EUR][1000 genomes]
rs2859419	1.00[EUR][1000 genomes]
rs61208751	1.00[EUR][1000 genomes]
rs6929955	1.00[EUR][1000 genomes]
rs73404056	1.00[EUR][1000 genomes]
rs73404067	1.00[EUR][1000 genomes]
rs73404101	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73729630	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9470178	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35889200-35898600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:35889400-35898600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:35889800-35901600	Weak transcription	Psoas Muscle	Psoas
4	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
5	chr6:35891000-35900400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:35893800-35898600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:35894000-35900200	Weak transcription	Lung	lung
8	chr6:35894400-35898600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:35894400-35898800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:35897600-35898600	Weak transcription	Fetal Brain Male	brain
11	chr6:35897800-35898800	Weak transcription	Placenta	Placenta
12	chr6:35898200-35898600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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