Variant report

Variant	rs6929955
Chromosome Location	chr6:35859872-35859873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35858887..35861466-chr6:35879366..35881952,2	K562	blood:
2	chr6:35852054..35854976-chr6:35859738..35862878,3	K562	blood:
3	chr6:35858729..35861629-chr6:35862047..35864881,3	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2766530	0.96[YRI][hapmap]
rs2817030	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859419	1.00[EUR][1000 genomes]
rs56881012	0.84[AFR][1000 genomes]
rs57599985	0.84[AFR][1000 genomes]
rs58738572	1.00[EUR][1000 genomes]
rs61208751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404056	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73404067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9969028	0.96[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
3	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:35835000-35865400	Weak transcription	Spleen	Spleen
6	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:35837400-35863200	Weak transcription	Pancreas	Pancrea
9	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
10	chr6:35837400-35887400	Weak transcription	Gastric	stomach
11	chr6:35837800-35863400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:35837800-35880600	Weak transcription	Aorta	Aorta
13	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:35838200-35871400	Weak transcription	HSMMtube	muscle
15	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
16	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:35839400-35873000	Weak transcription	NHLF	lung
18	chr6:35847800-35862600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:35847800-35863200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:35848400-35871400	Weak transcription	Lung	lung
21	chr6:35848400-35876200	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:35848600-35863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:35849000-35860000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:35849000-35862800	Weak transcription	Brain Anterior Caudate	brain
25	chr6:35849000-35872800	Weak transcription	Ovary	ovary
26	chr6:35849000-35875600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:35849000-35876600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:35849200-35885400	Weak transcription	NHDF-Ad	bronchial
29	chr6:35850000-35861800	Weak transcription	Fetal Kidney	kidney
30	chr6:35850200-35861200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:35850400-35860600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:35850400-35874400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:35850400-35876000	Weak transcription	Fetal Brain Female	brain
34	chr6:35850400-35876800	Weak transcription	Esophagus	oesophagus
35	chr6:35850600-35861000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:35851000-35871200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:35851000-35876600	Weak transcription	Colonic Mucosa	Colon
38	chr6:35851200-35861000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:35851200-35866400	Weak transcription	Thymus	Thymus
40	chr6:35851200-35866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:35851800-35861000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:35852000-35871000	Weak transcription	Fetal Stomach	stomach
43	chr6:35852200-35874400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:35852200-35876000	Weak transcription	Brain Germinal Matrix	brain
45	chr6:35852400-35866400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:35852400-35871400	Weak transcription	A549	lung
47	chr6:35852400-35876800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:35854600-35860600	Weak transcription	Adipose Nuclei	Adipose
49	chr6:35854600-35875600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:35855400-35863200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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