Variant report

Variant	rs56881012
Chromosome Location	chr6:35872531-35872532
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35865382..35871329-chr6:35872115..35877063,10	K562	blood:
2	chr6:35866650..35869358-chr6:35870695..35873274,2	MCF-7	breast:
3	chr6:35868640..35876310-chr6:35884426..35889377,9	K562	blood:
4	chr6:35870721..35873669-chr6:35874228..35876170,2	MCF-7	breast:
5	chr6:35870482..35875104-chr6:35885748..35889104,5	MCF-7	breast:
6	chr6:35866181..35870873-chr6:35870997..35876371,8	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2766530	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2817029	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2859418	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57599985	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60194097	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6929955	0.84[AFR][1000 genomes]
rs73404053	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73404059	0.81[AMR][1000 genomes]
rs73404086	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73729613	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9969028	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
6	chr6:35837400-35887400	Weak transcription	Gastric	stomach
7	chr6:35837800-35880600	Weak transcription	Aorta	Aorta
8	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
10	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:35839400-35873000	Weak transcription	NHLF	lung
12	chr6:35848400-35876200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:35849000-35872800	Weak transcription	Ovary	ovary
14	chr6:35849000-35875600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:35849000-35876600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:35849200-35885400	Weak transcription	NHDF-Ad	bronchial
17	chr6:35850400-35874400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:35850400-35876000	Weak transcription	Fetal Brain Female	brain
19	chr6:35850400-35876800	Weak transcription	Esophagus	oesophagus
20	chr6:35851000-35876600	Weak transcription	Colonic Mucosa	Colon
21	chr6:35852200-35874400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:35852200-35876000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:35852400-35876800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:35854600-35875600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:35855800-35875600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:35856000-35875600	Weak transcription	Fetal Intestine Large	intestine
27	chr6:35856600-35875600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:35856600-35885400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:35856800-35872800	Weak transcription	Osteobl	bone
30	chr6:35856800-35875600	Weak transcription	Liver	Liver
31	chr6:35856800-35876400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:35856800-35877400	Weak transcription	Fetal Lung	lung
33	chr6:35856800-35878400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:35856800-35880400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:35856800-35885000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:35856800-35885400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:35858200-35876200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:35858400-35872800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:35858800-35880400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:35860400-35877400	Weak transcription	HSMM	muscle
41	chr6:35861400-35877400	Weak transcription	NH-A	brain
42	chr6:35863200-35873400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:35863200-35874200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:35863200-35876000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:35863600-35875800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:35863600-35887000	Weak transcription	Pancreas	Pancrea
47	chr6:35864000-35874600	Strong transcription	Dnd41	blood
48	chr6:35864000-35876600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:35864000-35876600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:35864000-35876600	Weak transcription	Right Ventricle	heart

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