Variant report

Variant	rs73411091
Chromosome Location	chr15:55818803-55818804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55818674..55821558-chr15:55828731..55830449,2	MCF-7	breast:
2	chr15:55818426..55819436-chr15:55933526..55934353,4	MCF-7	breast:
3	chr15:55818424..55820652-chr15:55918654..55921682,3	MCF-7	breast:
4	chr15:55818609..55819363-chr15:55933519..55934249,2	MCF-7	breast:
5	chr15:55814401..55816505-chr15:55817575..55819685,2	K562	blood:
6	chr15:55818773..55820947-chr15:55823916..55827475,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12592019	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv833016	chr15:55749169-55897906	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	esv3348102	chr15:55791709-55831745	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv3344907	chr15:55800209-55830551	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55818600-55819200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr15:55818800-55819000	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr15:55818800-55819000	Active TSS	Stomach Smooth Muscle	stomach
4	chr15:55818800-55819000	Enhancers	HSMM	muscle
5	chr15:55818800-55819000	Flanking Active TSS	NHDF-Ad	bronchial
6	chr15:55818800-55819200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:55818800-55819200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:55818800-55819200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr15:55818800-55819200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:55818800-55819200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:55818800-55819200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:55818800-55819200	Enhancers	Primary B cells from peripheral blood	blood
13	chr15:55818800-55819200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr15:55818800-55819200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:55818800-55819200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:55818800-55819200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:55818800-55819200	Enhancers	Adipose Nuclei	Adipose
18	chr15:55818800-55819200	Active TSS	Brain Anterior Caudate	brain
19	chr15:55818800-55819200	Enhancers	Placenta	Placenta
20	chr15:55818800-55819200	Enhancers	Pancreas	Pancrea
21	chr15:55818800-55819200	Active TSS	Rectal Smooth Muscle	rectum
22	chr15:55818800-55819200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:55818800-55819200	Enhancers	Stomach Mucosa	stomach
24	chr15:55818800-55819200	Enhancers	GM12878-XiMat	blood
25	chr15:55818800-55819200	Enhancers	Hela-S3	cervix
26	chr15:55818800-55819200	Enhancers	NH-A	brain
27	chr15:55818800-55819400	Enhancers	Gastric	stomach
28	chr15:55818800-55819400	Flanking Active TSS	HepG2	liver

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