Variant report

Variant	rs7341237
Chromosome Location	chr6:88032390-88032391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:88030655..88033234-chr6:88038071..88039593,2	MCF-7	breast:
2	chr6:88031398..88035229-chr6:88037396..88042297,5	MCF-7	breast:
3	chr17:45972781..45973590-chr6:88032148..88032749,2	Hela-S3	cervix:
4	chr3:52231539..52232367-chr6:88032218..88032782,2	NB4	blood:
5	chr6:88030970..88032536-chr6:88054131..88056313,2	MCF-7	breast:
6	chr6:87864467..87866478-chr6:88032306..88034676,2	K562	blood:
7	chr6:88032389..88034079-chr6:88038245..88041213,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RARS2-5	chr6:88032001-88032392	NONHSAT113898

No data

Variant related genes	Relation type
ENSG00000203872	Chromatin interaction
ENSG00000264920	Chromatin interaction
ENSG00000272008	Chromatin interaction
ENSG00000167182	Chromatin interaction
ENSG00000188994	Chromatin interaction
ENSG00000164411	Chromatin interaction
ENSG00000023330	Chromatin interaction

rs_ID	r²[population]
rs11965302	0.84[AFR][1000 genomes]
rs15836	0.84[AFR][1000 genomes]
rs58221633	0.84[AFR][1000 genomes]
rs59445510	0.84[AFR][1000 genomes]
rs73754173	0.84[AFR][1000 genomes]
rs73754174	0.84[AFR][1000 genomes]
rs73754193	0.84[AFR][1000 genomes]

Disease	PMID	Source
PR interval in Tripanosoma cruzi seropositivity	24324551	GWAS catalog

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88031400-88032800	Active TSS	Liver	Liver
2	chr6:88031600-88032400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:88031600-88032600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:88031600-88032800	Active TSS	Brain Substantia Nigra	brain
5	chr6:88031600-88033000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:88031600-88033000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:88031600-88033000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr6:88031600-88033000	Active TSS	Psoas Muscle	Psoas
9	chr6:88031600-88033000	Active TSS	GM12878-XiMat	blood
10	chr6:88031600-88033200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:88031600-88033200	Active TSS	Brain Anterior Caudate	brain
12	chr6:88031600-88033200	Active TSS	Colonic Mucosa	Colon
13	chr6:88031600-88033200	Active TSS	Fetal Brain Female	brain
14	chr6:88031600-88033200	Active TSS	Fetal Muscle Trunk	muscle
15	chr6:88031800-88032400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:88031800-88032800	Active TSS	Primary T cells from cord blood	blood
17	chr6:88031800-88032800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr6:88031800-88033000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:88031800-88033000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:88031800-88033000	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:88031800-88033000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:88031800-88033000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:88031800-88033000	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr6:88031800-88033000	Active TSS	Aorta	Aorta
25	chr6:88031800-88033000	Active TSS	Colon Smooth Muscle	Colon
26	chr6:88031800-88033000	Active TSS	Fetal Intestine Large	intestine
27	chr6:88031800-88033000	Active TSS	Fetal Intestine Small	intestine
28	chr6:88031800-88033000	Active TSS	Ovary	ovary
29	chr6:88031800-88033000	Active TSS	Stomach Mucosa	stomach
30	chr6:88031800-88033000	Active TSS	NHDF-Ad	bronchial
31	chr6:88031800-88033000	Active TSS	NHLF	lung
32	chr6:88031800-88033200	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:88031800-88033200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:88031800-88033200	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:88031800-88033200	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr6:88031800-88033200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:88031800-88033200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:88031800-88033200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:88031800-88033200	Active TSS	Brain Cingulate Gyrus	brain
40	chr6:88031800-88033200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:88031800-88033200	Active TSS	Fetal Kidney	kidney
42	chr6:88031800-88033200	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:88031800-88033200	Active TSS	Fetal Lung	lung
44	chr6:88031800-88033200	Active TSS	Right Atrium	heart
45	chr6:88031800-88033200	Active TSS	Right Ventricle	heart
46	chr6:88031800-88033200	Active TSS	HSMM	muscle
47	chr6:88031800-88033400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:88032000-88032400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:88032000-88032400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:88032000-88032400	Active TSS	HepG2	liver

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