Variant report

Variant	rs73754173
Chromosome Location	chr6:87994382-87994383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87993480..87996037-chr6:87999003..88001401,2	MCF-7	breast:
2	chr6:87987743..87990741-chr6:87991579..87994871,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11962714	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965302	1.00[AFR][1000 genomes]
rs11966920	1.00[AMR][1000 genomes]
rs11968759	1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs15836	1.00[AFR][1000 genomes]
rs55829606	1.00[AMR][1000 genomes]
rs57689077	1.00[AMR][1000 genomes]
rs57952217	1.00[AMR][1000 genomes]
rs58021355	1.00[AMR][1000 genomes]
rs58221633	1.00[AFR][1000 genomes]
rs58750423	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58852967	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59445510	1.00[AFR][1000 genomes]
rs59753049	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60299482	1.00[AMR][1000 genomes]
rs60385156	0.83[AFR][1000 genomes]
rs61437530	1.00[AMR][1000 genomes]
rs61479073	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919193	0.83[AFR][1000 genomes]
rs6921010	1.00[AMR][1000 genomes]
rs6932490	1.00[AMR][1000 genomes]
rs7341237	0.84[AFR][1000 genomes]
rs73751912	1.00[AMR][1000 genomes]
rs73751917	1.00[AMR][1000 genomes]
rs73751925	1.00[AMR][1000 genomes]
rs73751926	1.00[AMR][1000 genomes]
rs73751927	1.00[AMR][1000 genomes]
rs73751934	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751984	1.00[AMR][1000 genomes]
rs73751987	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751989	1.00[AMR][1000 genomes]
rs73751990	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751994	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751996	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752009	1.00[AMR][1000 genomes]
rs73752021	1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754115	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754116	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754124	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754148	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754151	1.00[AMR][1000 genomes]
rs73754163	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754164	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754165	1.00[AMR][1000 genomes]
rs73754167	1.00[AMR][1000 genomes]
rs73754174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754187	1.00[AMR][1000 genomes]
rs73754193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754911	1.00[AMR][1000 genomes]
rs73754922	1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AMR][1000 genomes]
rs73755404	0.89[AFR][1000 genomes]
rs7750078	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761576	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752763	chr6:87981595-88001064	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87970600-87994800	Weak transcription	Fetal Brain Female	brain
2	chr6:87993400-87996600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:87993400-87996600	Weak transcription	HMEC	breast
4	chr6:87994200-88000600	Enhancers	Primary neutrophils fromperipheralblood	blood

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