Variant report

Variant	rs73754911
Chromosome Location	chr6:87805329-87805330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr6:87804587-87805395	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr6:87804683-87805402	Hela-S3	cervix:	n/a	n/a
3	SETDB1	chr6:87804743-87805474	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
CGA	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11962714	1.00[AMR][1000 genomes]
rs11963655	1.00[AMR][1000 genomes]
rs11966920	1.00[AMR][1000 genomes]
rs11968759	1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs55829606	1.00[AMR][1000 genomes]
rs57689077	1.00[AMR][1000 genomes]
rs57952217	1.00[AMR][1000 genomes]
rs58021355	1.00[AMR][1000 genomes]
rs58750423	1.00[AMR][1000 genomes]
rs58852967	1.00[AMR][1000 genomes]
rs59753049	1.00[AMR][1000 genomes]
rs60299482	1.00[AMR][1000 genomes]
rs61479073	1.00[AMR][1000 genomes]
rs6932490	1.00[AMR][1000 genomes]
rs73497561	1.00[AMR][1000 genomes]
rs73751912	1.00[AMR][1000 genomes]
rs73751917	1.00[AMR][1000 genomes]
rs73751925	1.00[AMR][1000 genomes]
rs73751926	1.00[AMR][1000 genomes]
rs73751927	1.00[AMR][1000 genomes]
rs73751934	1.00[AMR][1000 genomes]
rs73751984	1.00[AMR][1000 genomes]
rs73751987	1.00[AMR][1000 genomes]
rs73751989	1.00[AMR][1000 genomes]
rs73751990	1.00[AMR][1000 genomes]
rs73751994	1.00[AMR][1000 genomes]
rs73751996	1.00[AMR][1000 genomes]
rs73753603	1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	1.00[AMR][1000 genomes]
rs73754115	1.00[AMR][1000 genomes]
rs73754116	1.00[AMR][1000 genomes]
rs73754124	1.00[AMR][1000 genomes]
rs73754145	1.00[AMR][1000 genomes]
rs73754146	1.00[AMR][1000 genomes]
rs73754147	1.00[AMR][1000 genomes]
rs73754148	1.00[AMR][1000 genomes]
rs73754151	1.00[AMR][1000 genomes]
rs73754163	1.00[AMR][1000 genomes]
rs73754164	1.00[AMR][1000 genomes]
rs73754165	1.00[AMR][1000 genomes]
rs73754167	1.00[AMR][1000 genomes]
rs73754173	1.00[AMR][1000 genomes]
rs73754174	1.00[AMR][1000 genomes]
rs73754922	1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AMR][1000 genomes]
rs7750078	1.00[AMR][1000 genomes]
rs7761576	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87804800-87805400	Weak transcription	Placenta	Placenta
3	chr6:87805000-87805800	Enhancers	Hela-S3	cervix

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