Variant report

Variant	rs11962714
Chromosome Location	chr6:87885326-87885327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87880595..87882172-chr6:87885118..87887359,3	MCF-7	breast:
2	chr6:87884610..87889850-chr6:87890271..87893351,5	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11962012	1.00[YRI][hapmap]
rs11964518	1.00[YRI][hapmap]
rs11965302	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11965603	0.87[YRI][hapmap]
rs11966920	1.00[AMR][1000 genomes]
rs11968759	1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs15836	0.85[AFR][1000 genomes]
rs55829606	1.00[AMR][1000 genomes]
rs57689077	1.00[AMR][1000 genomes]
rs57952217	1.00[AMR][1000 genomes]
rs58021355	1.00[AMR][1000 genomes]
rs58221633	0.85[AFR][1000 genomes]
rs58750423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58852967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59445510	0.85[AFR][1000 genomes]
rs59753049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60299482	1.00[AMR][1000 genomes]
rs61437530	1.00[AMR][1000 genomes]
rs61479073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919193	0.87[YRI][hapmap]
rs6921010	1.00[AMR][1000 genomes]
rs6932490	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939602	0.87[YRI][hapmap]
rs73751912	1.00[AMR][1000 genomes]
rs73751917	1.00[AMR][1000 genomes]
rs73751925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751926	1.00[AMR][1000 genomes]
rs73751927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751984	1.00[AMR][1000 genomes]
rs73751987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751989	1.00[AMR][1000 genomes]
rs73751990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754151	1.00[AMR][1000 genomes]
rs73754163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754165	1.00[AMR][1000 genomes]
rs73754167	1.00[AMR][1000 genomes]
rs73754173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754174	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754187	1.00[AMR][1000 genomes]
rs73754193	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754911	1.00[AMR][1000 genomes]
rs73754922	1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AMR][1000 genomes]
rs7750078	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761576	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87866600-87885400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:87866600-87886000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:87866600-87886600	Weak transcription	Aorta	Aorta
4	chr6:87866600-87889800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:87866600-87890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:87866600-87890200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:87867000-87886000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:87867000-87895600	Weak transcription	HSMM	muscle
9	chr6:87867000-87915600	Weak transcription	NH-A	brain
10	chr6:87867200-87893400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:87867800-87885800	Weak transcription	Fetal Thymus	thymus
12	chr6:87867800-87886400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
14	chr6:87868200-87886000	Weak transcription	Thymus	Thymus
15	chr6:87868200-87889600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:87868600-87889800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:87869400-87885800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:87871400-87890000	Weak transcription	Pancreas	Pancrea
19	chr6:87871400-87890200	Weak transcription	Gastric	stomach
20	chr6:87874200-87890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:87874200-87892600	Weak transcription	NHDF-Ad	bronchial
22	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
23	chr6:87874600-87890000	Weak transcription	Psoas Muscle	Psoas
24	chr6:87875000-87910400	Weak transcription	K562	blood
25	chr6:87876400-87890200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:87876400-87890600	Weak transcription	NHLF	lung
27	chr6:87876600-87890000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:87877800-87886200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:87879600-87889000	Weak transcription	Spleen	Spleen
30	chr6:87879800-87889000	Weak transcription	Fetal Stomach	stomach
31	chr6:87879800-87889800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:87879800-87889800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:87879800-87890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:87879800-87890000	Weak transcription	Lung	lung
35	chr6:87879800-87923000	Weak transcription	Esophagus	oesophagus
36	chr6:87880000-87885400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:87880000-87886200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:87880200-87885400	Weak transcription	Dnd41	blood
39	chr6:87880200-87893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:87880600-87906000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:87881200-87893400	Weak transcription	HepG2	liver
42	chr6:87881400-87926200	Weak transcription	Liver	Liver
43	chr6:87881600-87893000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:87881600-87893200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:87881800-87888200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:87881800-87889000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:87881800-87909400	Weak transcription	Fetal Brain Male	brain
48	chr6:87882000-87889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:87882000-87899400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:87882200-87885400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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