Variant report

Variant	rs57689077
Chromosome Location	chr6:87867971-87867972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:86386276..86388267-chr6:87866260..87868340,2	K562	blood:
2	chr6:87866903..87868749-chr6:88285297..88287961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203875	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11962714	1.00[AMR][1000 genomes]
rs11966920	1.00[AMR][1000 genomes]
rs11968759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs55829606	1.00[AMR][1000 genomes]
rs57952217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58021355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58750423	1.00[AMR][1000 genomes]
rs58852967	1.00[AMR][1000 genomes]
rs59753049	1.00[AMR][1000 genomes]
rs60299482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61437530	1.00[AMR][1000 genomes]
rs61479073	1.00[AMR][1000 genomes]
rs6921010	1.00[AMR][1000 genomes]
rs6932490	1.00[AMR][1000 genomes]
rs73497561	1.00[AMR][1000 genomes]
rs73751912	1.00[AMR][1000 genomes]
rs73751917	1.00[AMR][1000 genomes]
rs73751925	1.00[AMR][1000 genomes]
rs73751926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751927	1.00[AMR][1000 genomes]
rs73751934	1.00[AMR][1000 genomes]
rs73751984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751987	1.00[AMR][1000 genomes]
rs73751989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751990	1.00[AMR][1000 genomes]
rs73751994	1.00[AMR][1000 genomes]
rs73751996	1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	1.00[AMR][1000 genomes]
rs73754115	1.00[AMR][1000 genomes]
rs73754116	1.00[AMR][1000 genomes]
rs73754124	1.00[AMR][1000 genomes]
rs73754145	1.00[AMR][1000 genomes]
rs73754146	1.00[AMR][1000 genomes]
rs73754147	1.00[AMR][1000 genomes]
rs73754148	1.00[AMR][1000 genomes]
rs73754151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754163	1.00[AMR][1000 genomes]
rs73754164	1.00[AMR][1000 genomes]
rs73754165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754173	1.00[AMR][1000 genomes]
rs73754174	1.00[AMR][1000 genomes]
rs73754187	1.00[AMR][1000 genomes]
rs73754193	1.00[AMR][1000 genomes]
rs73754911	1.00[AMR][1000 genomes]
rs73754922	1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AMR][1000 genomes]
rs7750078	1.00[AMR][1000 genomes]
rs7761576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87866000-87868200	Active TSS	Brain Germinal Matrix	brain
2	chr6:87866200-87868000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:87866400-87868200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr6:87866400-87871000	Weak transcription	Gastric	stomach
5	chr6:87866600-87868000	Weak transcription	Small Intestine	intestine
6	chr6:87866600-87868200	Weak transcription	Placenta	Placenta
7	chr6:87866600-87869400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:87866600-87869400	Weak transcription	Ovary	ovary
9	chr6:87866600-87870200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:87866600-87873800	Weak transcription	Psoas Muscle	Psoas
11	chr6:87866600-87877000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:87866600-87878200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:87866600-87879000	Weak transcription	Esophagus	oesophagus
14	chr6:87866600-87880000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:87866600-87883600	Weak transcription	Right Ventricle	heart
16	chr6:87866600-87883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:87866600-87885400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:87866600-87886000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:87866600-87886600	Weak transcription	Aorta	Aorta
20	chr6:87866600-87889800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:87866600-87890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:87866600-87890200	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:87866800-87868400	Enhancers	Fetal Heart	heart
24	chr6:87866800-87869800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:87866800-87871000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:87866800-87871200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:87866800-87871200	Weak transcription	Brain Substantia Nigra	brain
28	chr6:87866800-87873200	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:87866800-87873200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:87866800-87873400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:87866800-87873600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:87866800-87873600	Weak transcription	Stomach Mucosa	stomach
33	chr6:87866800-87875800	Weak transcription	A549	lung
34	chr6:87866800-87876200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:87867000-87868000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:87867000-87868000	Weak transcription	Brain Angular Gyrus	brain
37	chr6:87867000-87868000	Enhancers	Hela-S3	cervix
38	chr6:87867000-87868200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr6:87867000-87868200	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr6:87867000-87868600	Enhancers	Fetal Intestine Large	intestine
41	chr6:87867000-87868800	Enhancers	Fetal Brain Male	brain
42	chr6:87867000-87871000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:87867000-87871000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:87867000-87873400	Weak transcription	NHDF-Ad	bronchial
45	chr6:87867000-87873600	Weak transcription	Fetal Lung	lung
46	chr6:87867000-87873800	Weak transcription	Right Atrium	heart
47	chr6:87867000-87874000	Weak transcription	Fetal Kidney	kidney
48	chr6:87867000-87875800	Weak transcription	Osteobl	bone
49	chr6:87867000-87876000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:87867000-87876200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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