Variant report

Variant	rs55829606
Chromosome Location	chr6:87823992-87823993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11962714	1.00[AMR][1000 genomes]
rs11966920	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968759	1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs57689077	1.00[AMR][1000 genomes]
rs57952217	1.00[AMR][1000 genomes]
rs58021355	1.00[AMR][1000 genomes]
rs58750423	1.00[AMR][1000 genomes]
rs58852967	1.00[AMR][1000 genomes]
rs59753049	1.00[AMR][1000 genomes]
rs60299482	1.00[AMR][1000 genomes]
rs61437530	1.00[AMR][1000 genomes]
rs61479073	1.00[AMR][1000 genomes]
rs6921010	1.00[AMR][1000 genomes]
rs6932490	1.00[AMR][1000 genomes]
rs73497561	1.00[AMR][1000 genomes]
rs73751912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751925	1.00[AMR][1000 genomes]
rs73751926	1.00[AMR][1000 genomes]
rs73751927	1.00[AMR][1000 genomes]
rs73751934	1.00[AMR][1000 genomes]
rs73751984	1.00[AMR][1000 genomes]
rs73751987	1.00[AMR][1000 genomes]
rs73751989	1.00[AMR][1000 genomes]
rs73751990	1.00[AMR][1000 genomes]
rs73751994	1.00[AMR][1000 genomes]
rs73751996	1.00[AMR][1000 genomes]
rs73753603	1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	1.00[AMR][1000 genomes]
rs73754115	1.00[AMR][1000 genomes]
rs73754116	1.00[AMR][1000 genomes]
rs73754124	1.00[AMR][1000 genomes]
rs73754145	1.00[AMR][1000 genomes]
rs73754146	1.00[AMR][1000 genomes]
rs73754147	1.00[AMR][1000 genomes]
rs73754148	1.00[AMR][1000 genomes]
rs73754151	1.00[AMR][1000 genomes]
rs73754163	1.00[AMR][1000 genomes]
rs73754164	1.00[AMR][1000 genomes]
rs73754165	1.00[AMR][1000 genomes]
rs73754167	1.00[AMR][1000 genomes]
rs73754173	1.00[AMR][1000 genomes]
rs73754174	1.00[AMR][1000 genomes]
rs73754911	1.00[AMR][1000 genomes]
rs73754922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750078	1.00[AMR][1000 genomes]
rs7761576	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87815400-87824800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:87823800-87824000	Enhancers	HUES64 Cell Line	embryonic stem cell

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