Variant report

Variant	rs61437530
Chromosome Location	chr6:88006867-88006868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:88006860-88007191	Hela-S3	cervix:	n/a	chr6:88007014-88007025
2	STAT3	chr6:88006852-88007177	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
3	FOS	chr6:88006854-88007169	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr6:88006841-88007199	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr6:88006840-88007215	Hela-S3	cervix:	n/a	n/a
6	STAT3	chr6:88006856-88007178	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
7	FOS	chr6:88006834-88007202	MCF10A-Er-Src	breast:	n/a	n/a
8	TCF7L2	chr6:88006746-88007175	Hela-S3	cervix:	n/a	n/a
9	RCOR1	chr6:88006858-88007166	Hela-S3	cervix:	n/a	n/a
10	STAT3	chr6:88006852-88007176	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
11	FOS	chr6:88006840-88007198	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87998545..88000520-chr6:88004269..88006989,2	K562	blood:
2	chr6:88001168..88003376-chr6:88006507..88008311,2	K562	blood:

Variant related genes	Relation type
HSPD1P10	TF binding region
ENSG00000164411	Chromatin interaction

rs_ID	r²[population]
rs11962714	1.00[AMR][1000 genomes]
rs11966920	1.00[AMR][1000 genomes]
rs11968759	1.00[AMR][1000 genomes]
rs11969160	1.00[AMR][1000 genomes]
rs55829606	1.00[AMR][1000 genomes]
rs57689077	1.00[AMR][1000 genomes]
rs57952217	1.00[AMR][1000 genomes]
rs58021355	1.00[AMR][1000 genomes]
rs58750423	1.00[AMR][1000 genomes]
rs58852967	1.00[AMR][1000 genomes]
rs59753049	1.00[AMR][1000 genomes]
rs60299482	1.00[AMR][1000 genomes]
rs61479073	1.00[AMR][1000 genomes]
rs6921010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932490	1.00[AMR][1000 genomes]
rs73751912	1.00[AMR][1000 genomes]
rs73751917	1.00[AMR][1000 genomes]
rs73751925	1.00[AMR][1000 genomes]
rs73751926	1.00[AMR][1000 genomes]
rs73751927	1.00[AMR][1000 genomes]
rs73751934	1.00[AMR][1000 genomes]
rs73751984	1.00[AMR][1000 genomes]
rs73751987	1.00[AMR][1000 genomes]
rs73751989	1.00[AMR][1000 genomes]
rs73751990	1.00[AMR][1000 genomes]
rs73751994	1.00[AMR][1000 genomes]
rs73751996	1.00[AMR][1000 genomes]
rs73752009	1.00[AMR][1000 genomes]
rs73752021	1.00[AMR][1000 genomes]
rs73754109	1.00[AMR][1000 genomes]
rs73754114	1.00[AMR][1000 genomes]
rs73754115	1.00[AMR][1000 genomes]
rs73754116	1.00[AMR][1000 genomes]
rs73754124	1.00[AMR][1000 genomes]
rs73754145	1.00[AMR][1000 genomes]
rs73754146	1.00[AMR][1000 genomes]
rs73754147	1.00[AMR][1000 genomes]
rs73754148	1.00[AMR][1000 genomes]
rs73754151	1.00[AMR][1000 genomes]
rs73754163	1.00[AMR][1000 genomes]
rs73754164	1.00[AMR][1000 genomes]
rs73754165	1.00[AMR][1000 genomes]
rs73754167	1.00[AMR][1000 genomes]
rs73754173	1.00[AMR][1000 genomes]
rs73754174	1.00[AMR][1000 genomes]
rs73754187	1.00[AMR][1000 genomes]
rs73754193	1.00[AMR][1000 genomes]
rs73754922	1.00[AMR][1000 genomes]
rs73754924	1.00[AMR][1000 genomes]
rs73754926	1.00[AMR][1000 genomes]
rs7750078	1.00[AMR][1000 genomes]
rs7761576	1.00[AMR][1000 genomes]

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88006600-88007000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:88006800-88007800	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links