Variant report
| Variant | rs59445510 |
|---|---|
| Chromosome Location | chr6:88027546-88027547 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:88025054..88027628-chr6:88032575..88034188,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164411 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11962714 | 0.85[AFR][1000 genomes] |
| rs11965302 | 1.00[AFR][1000 genomes] |
| rs15836 | 1.00[AFR][1000 genomes] |
| rs58221633 | 1.00[AFR][1000 genomes] |
| rs58750423 | 0.85[AFR][1000 genomes] |
| rs58852967 | 0.85[AFR][1000 genomes] |
| rs59753049 | 0.85[AFR][1000 genomes] |
| rs60385156 | 0.83[AFR][1000 genomes] |
| rs61479073 | 0.85[AFR][1000 genomes] |
| rs6919193 | 0.83[AFR][1000 genomes] |
| rs7341237 | 0.84[AFR][1000 genomes] |
| rs73751934 | 0.85[AFR][1000 genomes] |
| rs73751987 | 0.85[AFR][1000 genomes] |
| rs73751990 | 0.85[AFR][1000 genomes] |
| rs73751994 | 0.85[AFR][1000 genomes] |
| rs73751996 | 0.85[AFR][1000 genomes] |
| rs73754114 | 0.85[AFR][1000 genomes] |
| rs73754115 | 0.85[AFR][1000 genomes] |
| rs73754116 | 0.85[AFR][1000 genomes] |
| rs73754124 | 0.85[AFR][1000 genomes] |
| rs73754145 | 0.85[AFR][1000 genomes] |
| rs73754146 | 0.85[AFR][1000 genomes] |
| rs73754147 | 0.85[AFR][1000 genomes] |
| rs73754148 | 0.85[AFR][1000 genomes] |
| rs73754163 | 0.85[AFR][1000 genomes] |
| rs73754164 | 0.85[AFR][1000 genomes] |
| rs73754173 | 1.00[AFR][1000 genomes] |
| rs73754174 | 1.00[AFR][1000 genomes] |
| rs73754193 | 1.00[AFR][1000 genomes] |
| rs73755404 | 0.89[AFR][1000 genomes] |
| rs7750078 | 0.85[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:88024200-88031800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
