Variant report

Variant	rs60385156
Chromosome Location	chr6:88071981-88071982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11965302	0.83[AFR][1000 genomes]
rs11965603	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs15836	0.83[AFR][1000 genomes]
rs35773306	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45494095	1.00[ASN][1000 genomes]
rs56222466	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58221633	0.83[AFR][1000 genomes]
rs59445510	0.83[AFR][1000 genomes]
rs6919193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939602	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754146	1.00[ASN][1000 genomes]
rs73754173	0.83[AFR][1000 genomes]
rs73754174	0.83[AFR][1000 genomes]
rs73754193	0.83[AFR][1000 genomes]
rs73754199	1.00[AMR][1000 genomes]
rs73754200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755410	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
2	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:88044800-88072600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
7	chr6:88054800-88075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:88055000-88075800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:88055200-88072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:88057400-88073800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:88057600-88077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:88061600-88094600	Weak transcription	Left Ventricle	heart
14	chr6:88063400-88075800	Weak transcription	Aorta	Aorta
15	chr6:88068800-88075800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:88069600-88072000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:88069800-88075800	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links