Variant report

Variant	rs73754200
Chromosome Location	chr6:88052077-88052078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87863115..87865429-chr6:88050926..88053366,2	MCF-7	breast:
2	chr6:88041023..88043490-chr6:88050888..88053357,2	K562	blood:

Variant related genes	Relation type
ENSG00000272008	Chromatin interaction
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11965603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35773306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56222466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60385156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919193	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939602	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754199	1.00[AMR][1000 genomes]
rs73754201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:88033200-88056400	Weak transcription	Liver	Liver
3	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
6	chr6:88039400-88061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:88040800-88052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:88043600-88058400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:88043800-88056400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:88043800-88056800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:88043800-88061400	Weak transcription	Gastric	stomach
14	chr6:88043800-88068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:88044000-88052400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:88044000-88052600	Weak transcription	Thymus	Thymus
17	chr6:88044000-88053600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:88044000-88054000	Weak transcription	Dnd41	blood
19	chr6:88044000-88054200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:88044000-88056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:88044000-88071400	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:88044400-88053000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:88044400-88056000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:88044400-88056800	Weak transcription	Fetal Thymus	thymus
25	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:88044800-88053800	Weak transcription	Psoas Muscle	Psoas
27	chr6:88044800-88072600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
29	chr6:88045000-88054000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:88045000-88054600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:88045000-88059800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:88045400-88053400	Weak transcription	Primary T cells from cord blood	blood
33	chr6:88046200-88055800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:88046400-88053400	Weak transcription	Primary B cells from cord blood	blood
35	chr6:88046400-88054400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:88046600-88055600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:88047200-88056600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:88048200-88059000	Weak transcription	Fetal Brain Female	brain
39	chr6:88048600-88053800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:88049200-88066800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:88049600-88061000	Weak transcription	Left Ventricle	heart
42	chr6:88050200-88062000	Weak transcription	Fetal Heart	heart
43	chr6:88050400-88052400	Weak transcription	K562	blood
44	chr6:88050400-88053400	Weak transcription	HSMM	muscle
45	chr6:88050800-88054200	Enhancers	HepG2	liver
46	chr6:88050800-88060400	Weak transcription	Osteobl	bone
47	chr6:88051000-88052800	Enhancers	Fetal Intestine Large	intestine
48	chr6:88051000-88053000	Enhancers	GM12878-XiMat	blood
49	chr6:88051000-88054000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:88051200-88071200	Weak transcription	Ovary	ovary

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