Variant report

Variant	rs56222466
Chromosome Location	chr6:88044809-88044810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88044455..88046283-chr6:88047721..88049403,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11965603	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35773306	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60385156	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919193	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928803	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939602	1.00[AMR][1000 genomes]
rs73754199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754200	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755410	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5386	chr6:88038551-88044921	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:88033200-88045200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:88033200-88045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:88033200-88048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:88033200-88056400	Weak transcription	Liver	Liver
7	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:88039000-88051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
11	chr6:88039200-88046000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:88039400-88047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:88039400-88061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:88039600-88046000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:88039800-88051000	Weak transcription	GM12878-XiMat	blood
16	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:88040800-88052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:88042400-88045000	Enhancers	K562	blood
20	chr6:88042400-88046400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:88042800-88045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:88042800-88045000	Enhancers	Right Ventricle	heart
23	chr6:88042800-88045800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:88043000-88045200	Enhancers	NHLF	lung
25	chr6:88043200-88045000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:88043400-88045400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:88043400-88045800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:88043600-88046000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:88043600-88058400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:88043800-88045800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:88043800-88056400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:88043800-88056800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:88043800-88061400	Weak transcription	Gastric	stomach
34	chr6:88043800-88068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:88044000-88045400	Strong transcription	Primary T cells from cord blood	blood
36	chr6:88044000-88052400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:88044000-88052600	Weak transcription	Thymus	Thymus
38	chr6:88044000-88053600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:88044000-88054000	Weak transcription	Dnd41	blood
40	chr6:88044000-88054200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:88044000-88056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:88044000-88071400	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:88044200-88045000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:88044200-88051400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:88044400-88045000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:88044400-88045000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:88044400-88046400	Strong transcription	Primary B cells from cord blood	blood
48	chr6:88044400-88047400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:88044400-88048000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:88044400-88048400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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