Variant report

Variant	rs73755403
Chromosome Location	chr6:88055158-88055159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88030970..88032536-chr6:88054131..88056313,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226524	Chromatin interaction
ENSG00000111850	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11965603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35773306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56222466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60385156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919193	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939602	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754199	1.00[AMR][1000 genomes]
rs73754200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73754201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73755411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:88033200-88056400	Weak transcription	Liver	Liver
3	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
6	chr6:88039400-88061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:88043600-88058400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:88043800-88056400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:88043800-88056800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:88043800-88061400	Weak transcription	Gastric	stomach
13	chr6:88043800-88068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:88044000-88056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:88044000-88071400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:88044400-88056000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:88044400-88056800	Weak transcription	Fetal Thymus	thymus
18	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:88044800-88072600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
21	chr6:88045000-88059800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:88046200-88055800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:88046600-88055600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:88047200-88056600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:88048200-88059000	Weak transcription	Fetal Brain Female	brain
26	chr6:88049200-88066800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:88049600-88061000	Weak transcription	Left Ventricle	heart
28	chr6:88050200-88062000	Weak transcription	Fetal Heart	heart
29	chr6:88050800-88060400	Weak transcription	Osteobl	bone
30	chr6:88051200-88071200	Weak transcription	Ovary	ovary
31	chr6:88051600-88070000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:88052600-88056800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:88052800-88055200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:88053000-88055200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:88053600-88056000	Weak transcription	Brain Angular Gyrus	brain
36	chr6:88053800-88055200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:88054000-88056400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:88054200-88059000	Weak transcription	Psoas Muscle	Psoas
39	chr6:88054600-88055200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:88054600-88067400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:88054600-88068400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:88054800-88075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:88054800-88110200	Weak transcription	Primary T cells from cord blood	blood
44	chr6:88055000-88063600	Weak transcription	HSMM	muscle
45	chr6:88055000-88075800	Weak transcription	Primary B cells from cord blood	blood

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