Variant report

Variant	rs73413407
Chromosome Location	chr12:119047159-119047160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73411647	1.00[AMR][1000 genomes]
rs73411686	1.00[AMR][1000 genomes]
rs73411698	1.00[AMR][1000 genomes]
rs73411700	1.00[AMR][1000 genomes]
rs73413406	1.00[AMR][1000 genomes]
rs73413408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413464	1.00[AMR][1000 genomes]
rs73413482	1.00[AMR][1000 genomes]
rs73413498	1.00[AMR][1000 genomes]
rs7967263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3505514	chr12:119045969-119050267	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3509709	chr12:119046419-119051617	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3509710	chr12:119046419-119051617	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3505515	chr12:119047048-119049139	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3505513	chr12:119047052-119049153	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3505516	chr12:119047083-119049115	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119042200-119047600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:119042800-119048600	Weak transcription	Pancreas	Pancrea
3	chr12:119044800-119049200	Weak transcription	Fetal Brain Male	brain
4	chr12:119045600-119048000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:119046600-119047400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:119046800-119048000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:119047000-119047200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:119047000-119047400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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