Variant report
| Variant | rs73413464 |
|---|---|
| Chromosome Location | chr12:119086769-119086770 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000255714 | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs73411647 | 1.00[AMR][1000 genomes] |
| rs73411686 | 1.00[AMR][1000 genomes] |
| rs73411698 | 1.00[AMR][1000 genomes] |
| rs73411700 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413406 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73413407 | 1.00[AMR][1000 genomes] |
| rs73413408 | 1.00[AMR][1000 genomes] |
| rs73413482 | 1.00[AMR][1000 genomes] |
| rs73413498 | 1.00[AMR][1000 genomes] |
| rs7967263 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv930978 | chr12:118866332-119450600 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043906 | chr12:118991884-119087146 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039515 | chr12:119085196-119218918 | ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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