Variant report

Variant	rs73417127
Chromosome Location	chr11:16580502-16580503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6486292	1.00[AMR][1000 genomes]
rs7103077	1.00[AMR][1000 genomes]
rs7114949	1.00[AMR][1000 genomes]
rs73417112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435536	1.00[AMR][1000 genomes]
rs73435553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927489	1.00[AMR][1000 genomes]
rs7937336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16573000-16594600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16576200-16581000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:16578200-16580600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16580000-16580600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:16580000-16582800	Weak transcription	Psoas Muscle	Psoas
6	chr11:16580200-16580800	Weak transcription	Fetal Heart	heart
7	chr11:16580200-16581400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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