Variant report

Variant	rs73435553
Chromosome Location	chr11:16552138-16552139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6486292	1.00[AMR][1000 genomes]
rs7103077	1.00[AMR][1000 genomes]
rs7114949	1.00[AMR][1000 genomes]
rs73417112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417126	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435536	1.00[AMR][1000 genomes]
rs73435556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927489	1.00[AMR][1000 genomes]
rs7937336	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16548400-16552400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr11:16548600-16552400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:16549400-16556200	Weak transcription	Left Ventricle	heart
5	chr11:16550600-16556600	Weak transcription	Fetal Heart	heart
6	chr11:16551000-16553000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16551400-16558600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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