Variant report
| Variant | rs73435536 |
|---|---|
| Chromosome Location | chr11:16540937-16540938 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:16428430..16430203-chr11:16538247..16541152,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs6486292 | 1.00[AMR][1000 genomes] |
| rs7103077 | 1.00[AMR][1000 genomes] |
| rs7114949 | 1.00[AMR][1000 genomes] |
| rs73417112 | 1.00[AMR][1000 genomes] |
| rs73417116 | 1.00[AMR][1000 genomes] |
| rs73417126 | 1.00[AMR][1000 genomes] |
| rs73417127 | 1.00[AMR][1000 genomes] |
| rs73417195 | 1.00[AMR][1000 genomes] |
| rs73417201 | 1.00[AMR][1000 genomes] |
| rs73435553 | 1.00[AMR][1000 genomes] |
| rs73435556 | 1.00[AMR][1000 genomes] |
| rs7927489 | 1.00[AMR][1000 genomes] |
| rs7937336 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553566 | chr11:16329009-16799044 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv897016 | chr11:16455794-16691743 | Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035768 | chr11:16530440-16578566 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2761650 | chr11:16530452-16541623 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:16533800-16541200 | Weak transcription | Fetal Heart | heart |
