Variant report

Variant	rs73422846
Chromosome Location	chr6:38288396-38288397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38275306..38278894-chr6:38287022..38290918,3	MCF-7	breast:
2	chr6:38286667..38288698-chr6:38291233..38294146,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11964509	1.00[EUR][1000 genomes]
rs11967720	1.00[EUR][1000 genomes]
rs57211386	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57898684	0.83[AFR][1000 genomes]
rs58257452	1.00[EUR][1000 genomes]
rs60395126	1.00[EUR][1000 genomes]
rs6917497	0.83[AFR][1000 genomes]
rs73420801	1.00[EUR][1000 genomes]
rs73422820	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422823	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422832	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422841	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422848	0.87[AFR][1000 genomes]
rs73422870	0.83[AFR][1000 genomes]
rs7748763	1.00[EUR][1000 genomes]
rs7763951	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38274400-38288600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:38275400-38301200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:38278000-38310600	Weak transcription	Gastric	stomach
4	chr6:38278200-38295000	Weak transcription	Lung	lung
5	chr6:38278400-38305400	Weak transcription	Pancreas	Pancrea
6	chr6:38282600-38301400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:38283000-38304000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:38284200-38296000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:38284800-38301200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:38286800-38290000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:38286800-38291000	Weak transcription	Psoas Muscle	Psoas
13	chr6:38286800-38295400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:38287200-38289400	Enhancers	Brain Anterior Caudate	brain
15	chr6:38287400-38288400	Weak transcription	Fetal Stomach	stomach
16	chr6:38287400-38289200	Enhancers	Brain Substantia Nigra	brain
17	chr6:38287400-38289400	Enhancers	Brain Germinal Matrix	brain
18	chr6:38287400-38289600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:38287400-38301200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:38287600-38289400	Flanking Active TSS	GM12878-XiMat	blood
21	chr6:38287600-38290000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:38287600-38301200	Weak transcription	Primary T cells from cord blood	blood
23	chr6:38287800-38288400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:38287800-38288400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr6:38287800-38289400	Enhancers	Fetal Brain Male	brain
26	chr6:38287800-38290000	Enhancers	Brain Hippocampus Middle	brain
27	chr6:38288000-38289800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:38288000-38290000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:38288000-38290800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:38288000-38290800	Weak transcription	HSMMtube	muscle
31	chr6:38288000-38291000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:38288000-38291000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:38288000-38291600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:38288000-38292800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:38288000-38305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:38288200-38289200	Enhancers	Primary B cells from peripheral blood	blood

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