Variant report

Variant	rs73422823
Chromosome Location	chr6:38277604-38277605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38275306..38278894-chr6:38287022..38290918,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11964509	1.00[EUR][1000 genomes]
rs11967720	1.00[EUR][1000 genomes]
rs56783945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57211386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58257452	1.00[EUR][1000 genomes]
rs58907208	1.00[AMR][1000 genomes]
rs60148639	1.00[AMR][1000 genomes]
rs60395126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662487	1.00[AMR][1000 genomes]
rs61097716	1.00[AMR][1000 genomes]
rs61104643	1.00[AMR][1000 genomes]
rs6936449	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420800	1.00[AMR][1000 genomes]
rs73420801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422812	1.00[AMR][1000 genomes]
rs73422820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422832	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422843	1.00[EUR][1000 genomes]
rs73422846	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422854	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422860	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422871	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422876	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422883	1.00[AMR][1000 genomes]
rs73422884	1.00[AMR][1000 genomes]
rs7748763	1.00[EUR][1000 genomes]
rs7763951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38274400-38288600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:38275000-38277800	Weak transcription	Right Atrium	heart
3	chr6:38275400-38277800	Weak transcription	Right Ventricle	heart
4	chr6:38275400-38301200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:38275800-38277800	Weak transcription	Psoas Muscle	Psoas
6	chr6:38276000-38277800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:38276000-38286200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:38276000-38287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:38276000-38287800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:38276200-38286800	Weak transcription	HSMMtube	muscle
11	chr6:38277600-38277800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:38277600-38278200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:38277600-38278200	Enhancers	GM12878-XiMat	blood
14	chr6:38277600-38278400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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