Variant report

Variant	rs73422884
Chromosome Location	chr6:38320219-38320220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56783945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57211386	1.00[AMR][1000 genomes]
rs58907208	1.00[AMR][1000 genomes]
rs59032311	0.84[AFR][1000 genomes]
rs60148639	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60395126	1.00[AMR][1000 genomes]
rs60662487	1.00[AMR][1000 genomes]
rs61097716	1.00[AMR][1000 genomes]
rs61104643	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936449	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420800	1.00[AMR][1000 genomes]
rs73420801	1.00[AMR][1000 genomes]
rs73422812	1.00[AMR][1000 genomes]
rs73422820	1.00[AMR][1000 genomes]
rs73422823	1.00[AMR][1000 genomes]
rs73422832	1.00[AMR][1000 genomes]
rs73422841	1.00[AMR][1000 genomes]
rs73422854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422883	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763951	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:38304600-38323000	Weak transcription	Ovary	ovary
4	chr6:38309800-38323400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:38310800-38326000	Weak transcription	Lung	lung
6	chr6:38311400-38322000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:38312000-38326600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:38313200-38321400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:38313800-38325800	Weak transcription	Psoas Muscle	Psoas
10	chr6:38313800-38331200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:38314800-38325800	Weak transcription	Right Atrium	heart
12	chr6:38315200-38325800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:38316600-38321600	Weak transcription	Fetal Brain Female	brain
15	chr6:38316600-38322400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:38316800-38322800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:38318000-38322400	Weak transcription	Fetal Brain Male	brain
18	chr6:38318200-38324600	Weak transcription	Small Intestine	intestine
19	chr6:38318600-38321000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:38318800-38320800	Enhancers	GM12878-XiMat	blood
21	chr6:38319000-38322400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:38319200-38320800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:38319200-38321200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:38319200-38322400	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:38319200-38322600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:38319200-38322600	Weak transcription	Brain Anterior Caudate	brain
27	chr6:38319200-38322800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:38319200-38322800	Weak transcription	Osteobl	bone
29	chr6:38319200-38323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:38319200-38323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:38319200-38325400	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:38319200-38325600	Weak transcription	Fetal Stomach	stomach
33	chr6:38319200-38327200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:38319200-38334200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:38319400-38322000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:38320000-38325400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:38320200-38321800	Enhancers	NHDF-Ad	bronchial
38	chr6:38320200-38322600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:38320200-38322800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links