Variant report

Variant	rs57211386
Chromosome Location	chr6:38273334-38273335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38269604..38272894-chr6:38272996..38276303,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11964509	1.00[EUR][1000 genomes]
rs11967720	1.00[EUR][1000 genomes]
rs56783945	1.00[AMR][1000 genomes]
rs58257452	1.00[EUR][1000 genomes]
rs58907208	1.00[AMR][1000 genomes]
rs60148639	1.00[AMR][1000 genomes]
rs60395126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662487	1.00[AMR][1000 genomes]
rs61097716	1.00[AMR][1000 genomes]
rs61104643	1.00[AMR][1000 genomes]
rs6936449	1.00[AMR][1000 genomes]
rs73420800	1.00[AMR][1000 genomes]
rs73420801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422812	1.00[AMR][1000 genomes]
rs73422820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422823	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422841	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422843	1.00[EUR][1000 genomes]
rs73422846	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73422854	1.00[AMR][1000 genomes]
rs73422856	1.00[AMR][1000 genomes]
rs73422860	1.00[AMR][1000 genomes]
rs73422871	1.00[AMR][1000 genomes]
rs73422874	1.00[AMR][1000 genomes]
rs73422876	1.00[AMR][1000 genomes]
rs73422883	1.00[AMR][1000 genomes]
rs73422884	1.00[AMR][1000 genomes]
rs7748763	1.00[EUR][1000 genomes]
rs7763951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38249200-38275600	Weak transcription	Fetal Brain Male	brain
2	chr6:38267400-38274000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:38270200-38275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:38270800-38274000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:38270800-38275600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:38271000-38275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:38271200-38275600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:38271400-38274600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:38272600-38273600	Enhancers	GM12878-XiMat	blood

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