Variant report

Variant	rs73431662
Chromosome Location	chr11:4086096-4086097
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4083954..4086302-chr11:4087607..4091172,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16929551	1.00[EUR][1000 genomes]
rs56724828	1.00[EUR][1000 genomes]
rs58288151	1.00[EUR][1000 genomes]
rs59984032	1.00[EUR][1000 genomes]
rs73417145	1.00[EUR][1000 genomes]
rs73417150	1.00[EUR][1000 genomes]
rs73427545	1.00[EUR][1000 genomes]
rs73427561	1.00[EUR][1000 genomes]
rs73427572	1.00[EUR][1000 genomes]
rs73429626	1.00[EUR][1000 genomes]
rs73429634	1.00[EUR][1000 genomes]
rs73429638	1.00[EUR][1000 genomes]
rs73431654	1.00[EUR][1000 genomes]
rs73431655	1.00[EUR][1000 genomes]
rs73431657	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4066200-4104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:4066400-4107800	Weak transcription	Small Intestine	intestine
3	chr11:4067000-4087400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:4067800-4093200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:4070800-4108600	Weak transcription	HSMM	muscle
6	chr11:4073000-4093200	Weak transcription	Fetal Intestine Small	intestine
7	chr11:4076000-4087000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:4076200-4103000	Weak transcription	Fetal Intestine Large	intestine
9	chr11:4078000-4093200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:4079000-4093000	Weak transcription	Brain Germinal Matrix	brain
11	chr11:4079000-4112600	Weak transcription	Fetal Brain Female	brain
12	chr11:4079600-4087200	Weak transcription	NH-A	brain
13	chr11:4079800-4093200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:4080000-4086200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:4080200-4088000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:4080400-4087800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:4081000-4089800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:4081000-4090000	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:4081000-4090000	Weak transcription	Esophagus	oesophagus
20	chr11:4081000-4101800	Weak transcription	Lung	lung
21	chr11:4081000-4104600	Weak transcription	Colonic Mucosa	Colon
22	chr11:4081200-4093000	Weak transcription	Fetal Kidney	kidney
23	chr11:4081200-4095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:4081400-4095600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:4081600-4086400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:4081600-4092800	Weak transcription	Fetal Stomach	stomach
27	chr11:4081800-4095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:4081800-4095600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:4082000-4087000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:4082000-4093400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:4082400-4087600	Weak transcription	Brain Substantia Nigra	brain
32	chr11:4082400-4089600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:4082400-4089800	Weak transcription	Fetal Lung	lung
34	chr11:4082400-4089800	Weak transcription	HepG2	liver
35	chr11:4082600-4086600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:4082600-4090200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:4082600-4091000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:4082600-4093000	Weak transcription	Placenta	Placenta
39	chr11:4082600-4093200	Weak transcription	Brain Anterior Caudate	brain
40	chr11:4082600-4093400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:4082600-4094800	Weak transcription	Spleen	Spleen
42	chr11:4082600-4107400	Weak transcription	Stomach Mucosa	stomach
43	chr11:4082800-4086200	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:4082800-4093600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:4082800-4103400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:4083000-4090800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:4083000-4094200	Weak transcription	K562	blood
48	chr11:4083000-4095000	Weak transcription	HMEC	breast
49	chr11:4083200-4086800	Weak transcription	Adipose Nuclei	Adipose
50	chr11:4083200-4087200	Enhancers	Rectal Mucosa Donor 31	rectum

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