Variant report

Variant	rs73429638
Chromosome Location	chr11:4027667-4027668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16929551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929583	1.00[AMR][1000 genomes]
rs1899478	0.80[AFR][1000 genomes]
rs35960304	1.00[AMR][1000 genomes]
rs56724828	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57599213	1.00[AMR][1000 genomes]
rs57719656	1.00[AMR][1000 genomes]
rs58288151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58677531	1.00[AMR][1000 genomes]
rs59787805	1.00[AMR][1000 genomes]
rs59984032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60473343	1.00[AMR][1000 genomes]
rs73417145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417174	1.00[AMR][1000 genomes]
rs73425486	1.00[AMR][1000 genomes]
rs73425494	1.00[AMR][1000 genomes]
rs73427517	1.00[AMR][1000 genomes]
rs73427519	1.00[AMR][1000 genomes]
rs73427520	1.00[AMR][1000 genomes]
rs73427524	1.00[AMR][1000 genomes]
rs73427545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427556	1.00[AMR][1000 genomes]
rs73427561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427572	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429609	1.00[AMR][1000 genomes]
rs73429612	1.00[AMR][1000 genomes]
rs73429626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429634	1.00[EUR][1000 genomes]
rs73431611	1.00[AMR][1000 genomes]
rs73431633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431654	1.00[EUR][1000 genomes]
rs73431655	1.00[EUR][1000 genomes]
rs73431657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
2	chr11:4017400-4041400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:4017600-4043400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:4020800-4037600	Weak transcription	Pancreas	Pancrea
5	chr11:4020800-4045000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:4021000-4032200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:4021000-4043600	Weak transcription	Thymus	Thymus
8	chr11:4021000-4044200	Weak transcription	Fetal Thymus	thymus
9	chr11:4021000-4044400	Weak transcription	Dnd41	blood
10	chr11:4027000-4028200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:4027000-4028800	Enhancers	Primary T cells from cord blood	blood
12	chr11:4027000-4028800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:4027000-4029200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:4027000-4029200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:4027000-4029200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:4027000-4029600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:4027000-4030000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr11:4027200-4028600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:4027200-4029000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:4027200-4029200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr11:4027200-4029200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:4027200-4029200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr11:4027200-4029200	Enhancers	Psoas Muscle	Psoas
24	chr11:4027200-4030000	Enhancers	Fetal Muscle Leg	muscle
25	chr11:4027600-4027800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:4027600-4029000	Enhancers	Skeletal Muscle Male	skeletal muscle

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