Variant report

Variant	rs56724828
Chromosome Location	chr11:4102820-4102821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3862793..3864567-chr11:4100746..4102871,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16929551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929583	1.00[AMR][1000 genomes]
rs35960304	1.00[AMR][1000 genomes]
rs57599213	1.00[AMR][1000 genomes]
rs57719656	1.00[AMR][1000 genomes]
rs58288151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58677531	1.00[AMR][1000 genomes]
rs59787805	1.00[AMR][1000 genomes]
rs59984032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60473343	1.00[AMR][1000 genomes]
rs73417145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417174	1.00[AMR][1000 genomes]
rs73425486	1.00[AMR][1000 genomes]
rs73425494	1.00[AMR][1000 genomes]
rs73427517	1.00[AMR][1000 genomes]
rs73427519	1.00[AMR][1000 genomes]
rs73427520	1.00[AMR][1000 genomes]
rs73427524	1.00[AMR][1000 genomes]
rs73427545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427556	1.00[AMR][1000 genomes]
rs73427561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429609	1.00[AMR][1000 genomes]
rs73429612	1.00[AMR][1000 genomes]
rs73429626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429634	1.00[EUR][1000 genomes]
rs73429638	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431633	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431654	1.00[EUR][1000 genomes]
rs73431655	1.00[EUR][1000 genomes]
rs73431657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4066200-4104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:4066400-4107800	Weak transcription	Small Intestine	intestine
3	chr11:4070800-4108600	Weak transcription	HSMM	muscle
4	chr11:4076200-4103000	Weak transcription	Fetal Intestine Large	intestine
5	chr11:4079000-4112600	Weak transcription	Fetal Brain Female	brain
6	chr11:4081000-4104600	Weak transcription	Colonic Mucosa	Colon
7	chr11:4082600-4107400	Weak transcription	Stomach Mucosa	stomach
8	chr11:4082800-4103400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:4086200-4115200	Weak transcription	NHDF-Ad	bronchial
10	chr11:4087600-4115000	Weak transcription	HSMMtube	muscle
11	chr11:4087800-4107800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:4088600-4107800	Weak transcription	Right Ventricle	heart
13	chr11:4091600-4107600	Weak transcription	Psoas Muscle	Psoas
14	chr11:4093600-4112600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:4093800-4103800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:4093800-4104000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:4093800-4115000	Weak transcription	Brain Germinal Matrix	brain
18	chr11:4093800-4115200	Weak transcription	Fetal Kidney	kidney
19	chr11:4094000-4103000	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:4094000-4103000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:4094000-4103800	Weak transcription	Fetal Lung	lung
22	chr11:4094000-4106200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:4094000-4107800	Weak transcription	Brain Angular Gyrus	brain
24	chr11:4094000-4108600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:4094000-4108600	Weak transcription	Osteobl	bone
26	chr11:4094000-4115000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:4094000-4115000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:4094000-4115200	Weak transcription	Brain Substantia Nigra	brain
29	chr11:4094400-4103200	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:4095800-4109400	Weak transcription	K562	blood
31	chr11:4096000-4103000	Weak transcription	HMEC	breast
32	chr11:4096000-4103400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:4096000-4103400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:4096000-4103800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:4096000-4103800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:4096000-4107600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:4096200-4103200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:4096200-4103400	Weak transcription	Fetal Intestine Small	intestine
39	chr11:4096200-4104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:4097800-4103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:4098200-4115000	Weak transcription	Hela-S3	cervix
42	chr11:4098400-4103400	Weak transcription	NHEK	skin
43	chr11:4098400-4103800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:4099400-4107800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:4099400-4111200	Strong transcription	Fetal Thymus	thymus
46	chr11:4100200-4115200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:4100400-4110400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:4100600-4106600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:4100600-4115200	Weak transcription	NHLF	lung
50	chr11:4101000-4107400	Strong transcription	Primary T cells fromperipheralblood	blood

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