Variant report

Variant	rs73427520
Chromosome Location	chr11:3966960-3966961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16929551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16929583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35960304	1.00[AMR][1000 genomes]
rs55679086	0.84[AFR][1000 genomes]
rs56724828	1.00[AMR][1000 genomes]
rs57599213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57719656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58288151	1.00[AMR][1000 genomes]
rs58677531	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58887887	1.00[EUR][1000 genomes]
rs59787805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59984032	1.00[AMR][1000 genomes]
rs60473343	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417145	1.00[AMR][1000 genomes]
rs73417150	1.00[AMR][1000 genomes]
rs73417174	1.00[AMR][1000 genomes]
rs73425465	1.00[EUR][1000 genomes]
rs73425486	1.00[AMR][1000 genomes]
rs73425494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427517	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427519	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427524	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427556	1.00[AMR][1000 genomes]
rs73427561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427572	1.00[AMR][1000 genomes]
rs73429609	1.00[AMR][1000 genomes]
rs73429612	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429626	1.00[AMR][1000 genomes]
rs73429638	1.00[AMR][1000 genomes]
rs73431611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv896895	chr11:3942001-3972236	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3950400-3972200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:3951200-3967600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:3958800-3968000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr11:3960000-3967600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:3960200-3967600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:3961400-3968600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:3961400-3968600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:3961400-3969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:3961600-3967600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:3961600-3967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:3961600-3968000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:3961600-3968400	Weak transcription	NHEK	skin
14	chr11:3961600-3975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:3961800-3968000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:3962000-3971800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:3962000-3973400	Weak transcription	Ovary	ovary
18	chr11:3962400-3968000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:3962400-3968400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:3962600-3968200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:3963000-3967000	Enhancers	Fetal Thymus	thymus
22	chr11:3963000-3968600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:3963000-3973200	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:3963200-3967800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:3963200-3968400	Enhancers	Primary hematopoietic stem cells	blood
26	chr11:3963400-3969400	Enhancers	Adipose Nuclei	Adipose
27	chr11:3963400-3969400	Enhancers	Left Ventricle	heart
28	chr11:3963600-3967800	Weak transcription	Colonic Mucosa	Colon
29	chr11:3963800-3967200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:3964200-3967000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:3964200-3967800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:3964200-3968000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:3964200-3968000	Weak transcription	Placenta	Placenta
34	chr11:3964400-3968000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:3964400-3968000	Weak transcription	Lung	lung
36	chr11:3964400-3968400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr11:3964400-3968600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr11:3964400-3971600	Weak transcription	A549	lung
39	chr11:3964400-3972000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:3964400-3972400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:3964600-3967800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr11:3964600-3968000	Weak transcription	Fetal Kidney	kidney
43	chr11:3964600-3970000	Weak transcription	K562	blood
44	chr11:3964800-3967200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:3964800-3967400	Enhancers	Primary T cells from cord blood	blood
46	chr11:3964800-3967400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:3964800-3967800	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr11:3964800-3968000	Weak transcription	HMEC	breast
49	chr11:3965000-3967000	Weak transcription	Primary B cells from cord blood	blood
50	chr11:3965000-3967800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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