Variant report

Variant	rs73440541
Chromosome Location	chr6:54120979-54120980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10447407	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10456680	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10484644	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10948805	0.95[EUR][1000 genomes]
rs12190132	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12194521	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12197347	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12198031	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12198070	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12201826	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206200	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212689	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16885122	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1934790	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2754786	0.87[ASN][1000 genomes]
rs60334573	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62396365	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913087	0.96[EUR][1000 genomes]
rs6913138	0.96[EUR][1000 genomes]
rs7741347	0.96[EUR][1000 genomes]
rs7746489	0.85[EUR][1000 genomes]
rs7755107	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7765626	0.96[EUR][1000 genomes]
rs7773258	0.95[EUR][1000 genomes]
rs7774316	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296744	0.96[EUR][1000 genomes]
rs9296745	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296747	0.96[EUR][1000 genomes]
rs9357793	0.95[EUR][1000 genomes]
rs9357795	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9367556	0.96[EUR][1000 genomes]
rs9382318	0.85[EUR][1000 genomes]
rs9382319	0.85[EUR][1000 genomes]
rs9395924	0.93[EUR][1000 genomes]
rs9464048	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9885789	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54112800-54121000	Weak transcription	Left Ventricle	heart
2	chr6:54119600-54121600	Enhancers	Fetal Heart	heart
3	chr6:54119800-54121800	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:54119800-54121800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:54120000-54121000	Weak transcription	Right Atrium	heart
6	chr6:54120000-54121000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:54120200-54121000	Weak transcription	Right Ventricle	heart
8	chr6:54120200-54122000	Enhancers	Colon Smooth Muscle	Colon
9	chr6:54120400-54121200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:54120400-54121800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:54120600-54121000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:54120600-54121200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:54120600-54121200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:54120600-54121200	Enhancers	HUVEC	blood vessel
15	chr6:54120600-54121400	Enhancers	HSMMtube	muscle
16	chr6:54120800-54121200	Enhancers	Fetal Muscle Leg	muscle
17	chr6:54120800-54121200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr6:54120800-54121400	Enhancers	Aorta	Aorta
19	chr6:54120800-54121400	Enhancers	Psoas Muscle	Psoas

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