Variant report

Variant	rs9357793
Chromosome Location	chr6:54125200-54125201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10447407	0.88[EUR][1000 genomes]
rs10456680	0.99[EUR][1000 genomes]
rs10484644	0.99[EUR][1000 genomes]
rs10948805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10948810	0.93[CEU][hapmap]
rs12190132	0.99[EUR][1000 genomes]
rs12194521	0.99[EUR][1000 genomes]
rs12197347	0.99[EUR][1000 genomes]
rs12198031	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12198070	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12201826	0.99[EUR][1000 genomes]
rs12206200	0.88[EUR][1000 genomes]
rs12208501	0.85[CEU][hapmap]
rs12212689	0.88[EUR][1000 genomes]
rs12212836	0.85[CEU][hapmap]
rs1298143	0.84[CEU][hapmap]
rs16885122	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1934790	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2297980	0.85[CEU][hapmap]
rs60334573	0.88[EUR][1000 genomes]
rs62396365	0.87[EUR][1000 genomes]
rs6913087	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6913138	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6937514	0.85[CEU][hapmap]
rs73440541	0.95[EUR][1000 genomes]
rs7741347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7746489	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7755107	0.99[EUR][1000 genomes]
rs7765626	0.99[EUR][1000 genomes]
rs7773258	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774316	0.87[EUR][1000 genomes]
rs9296744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296745	0.99[EUR][1000 genomes]
rs9296747	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9349700	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs9357795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370276	0.85[CEU][hapmap]
rs9382311	0.85[CEU][hapmap]
rs9382318	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9382319	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9395920	0.85[CEU][hapmap]
rs9395924	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9464048	0.99[EUR][1000 genomes]
rs9885789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv970681	chr6:54122023-54128223	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54121400-54131200	Weak transcription	Left Ventricle	heart
2	chr6:54121400-54131400	Weak transcription	Psoas Muscle	Psoas
3	chr6:54121800-54131400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:54122600-54129800	Weak transcription	Fetal Heart	heart
5	chr6:54124400-54126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:54124400-54126000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:54124400-54127000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:54124600-54125800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:54124600-54125800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:54124600-54126000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:54124800-54125200	Enhancers	Osteobl	bone
12	chr6:54124800-54129200	Enhancers	Fetal Intestine Large	intestine
13	chr6:54125200-54125800	Active TSS	Osteobl	bone

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