Variant report

Variant	rs9296747
Chromosome Location	chr6:54135951-54135952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10447407	0.89[EUR][1000 genomes]
rs10456680	1.00[EUR][1000 genomes]
rs10484644	1.00[EUR][1000 genomes]
rs10948805	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948810	0.93[CEU][hapmap]
rs12190132	1.00[EUR][1000 genomes]
rs12194521	1.00[EUR][1000 genomes]
rs12197347	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198031	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12198070	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12201826	1.00[EUR][1000 genomes]
rs12206200	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12212689	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12212836	0.85[CEU][hapmap]
rs1298143	0.84[CEU][hapmap]
rs16885122	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1934790	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2297980	0.85[CEU][hapmap]
rs60334573	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62396365	0.88[EUR][1000 genomes]
rs6913087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937514	0.86[CEU][hapmap]
rs73440541	0.96[EUR][1000 genomes]
rs7741347	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746489	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755107	1.00[EUR][1000 genomes]
rs7765626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773258	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774316	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9296744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296745	1.00[EUR][1000 genomes]
rs9349700	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9357793	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9357795	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367556	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370276	0.86[CEU][hapmap]
rs9382311	0.85[CEU][hapmap]
rs9382318	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382319	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395920	0.86[CEU][hapmap]
rs9395924	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464048	1.00[EUR][1000 genomes]
rs9885789	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54131800-54137400	Weak transcription	Left Ventricle	heart
2	chr6:54135800-54136400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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