Variant report
| Variant | rs73449124 |
|---|---|
| Chromosome Location | chr15:87537633-87537634 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1010418 | 0.98[AFR][1000 genomes] |
| rs11073687 | 0.99[AFR][1000 genomes] |
| rs11073690 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12102152 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1433465 | 1.00[EUR][1000 genomes] |
| rs1433466 | 1.00[EUR][1000 genomes] |
| rs1897662 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56053082 | 1.00[EUR][1000 genomes] |
| rs57832304 | 1.00[EUR][1000 genomes] |
| rs73449117 | 0.98[AFR][1000 genomes] |
| rs73449118 | 0.98[AFR][1000 genomes] |
| rs73449121 | 0.98[AFR][1000 genomes] |
| rs73449126 | 1.00[AFR][1000 genomes] |
| rs73450878 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74025747 | 0.98[AFR][1000 genomes] |
| rs74025749 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74025750 | 0.94[AFR][1000 genomes] |
| rs74026001 | 1.00[EUR][1000 genomes] |
| rs8023616 | 0.98[AFR][1000 genomes] |
| rs8028575 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8031800 | 0.98[AFR][1000 genomes] |
| rs8032971 | 0.99[AFR][1000 genomes] |
| rs8033002 | 0.98[AFR][1000 genomes] |
| rs8033797 | 0.99[AFR][1000 genomes] |
| rs8035129 | 0.98[AFR][1000 genomes] |
| rs8037455 | 0.98[AFR][1000 genomes] |
| rs8037857 | 0.99[AFR][1000 genomes] |
| rs8037899 | 0.99[AFR][1000 genomes] |
| rs8038098 | 0.98[AFR][1000 genomes] |
| rs8038215 | 0.95[AFR][1000 genomes] |
| rs8039824 | 0.98[AFR][1000 genomes] |
| rs8040154 | 0.98[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039254 | chr15:87070357-87942988 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv533986 | chr15:87100872-87633926 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039005 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv542465 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044157 | chr15:87458558-88101699 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:87521800-87540600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
